Locus 2159

Sequence ID 2L_DroMel_CAF1
Location 5,814,080 – 5,814,181
Length 101
Max. P 0.840154
window3489

overview

Window 9

Location 5,814,080 – 5,814,181
Length 101
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 84.74
Mean single sequence MFE -27.10
Consensus MFE -20.88
Energy contribution -21.52
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.77
SVM decision value 0.75
SVM RNA-class probability 0.840154
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5814080 101 - 22407834
------AAGUAUGUUUGUUCGGAUCUGCUUUAAGUUAAAUCAAUAAACAUACUU---ACAUA----CAUGGUUAGGGCUUAGGUCUUAUAGAAAUUUCUAUGCCGGUCAUGAGC
------((((((((((((...(((..((.....))...))).))))))))))))---.....----((((..(..(((.((((..((.....))..)))).))))..))))... ( -23.70)
>DroSec_CAF1 13193 114 - 1
AGAAACAAGUAUGUUUGCUGUGAUCUGCUUUAAGUUAAAUCAAUAAACAUACUUACUACAUACAUUCAUAGUUAUGGCUUAGGGCUUAUAGAAAUUUCUAUGCCGGUCAUGAGC
......(((((((((((...((((..((.....))...)))).))))))))))).................((((((((...(((..(((((....)))))))))))))))).. ( -26.80)
>DroSim_CAF1 12313 111 - 1
AGAAACAAGUAUGUUUGCUGGGAUCUGCUUUAAGUUAAAUCAAUAAACAUACUU---ACAUACAUUCAUGGUUAUGGCUUAGGUCUUAUAGAAAUUUCUAUGCCGGUCAUGAGC
......(((((((((((.(((.....((.....))....))).)))))))))))---.......(((((((...((((.((((..((.....))..)))).)))).))))))). ( -26.60)
>DroEre_CAF1 37141 107 - 1
CGAAACAAGUAUGUUUGGUCGGAUGUGCUUUAAGUUAAAUCAAUAAACAUACUU---UAUUC--CGCAUGGUUAUGGCG--GGUGCUGUAGAAGUUUCUAUGCCGCUCAUGAGC
.(((..(((((((((((....(((..((.....))...)))..)))))))))))---..)))--.....(.((((((((--(....((((((....)))))))))).))))).) ( -27.00)
>DroYak_CAF1 37395 107 - 1
AGAAACAAGUAUGUUUGGUCGGAUCUGCUUUAAGUUAAAUCAAUAAACAUACUU---UAUUC--UUCGCGGUUAUGGCU--GGUUUUAUAGAAAUUUCUAUGCCGGUCAUGAGC
((((..(((((((((((....(((..((.....))...)))..)))))))))))---..)))--)....(.((((((((--(((...(((((....)))))))))))))))).) ( -31.40)
>consensus
AGAAACAAGUAUGUUUGCUCGGAUCUGCUUUAAGUUAAAUCAAUAAACAUACUU___ACAUA__UUCAUGGUUAUGGCUUAGGUCUUAUAGAAAUUUCUAUGCCGGUCAUGAGC
......(((((((((((....(((..((.....))...)))..))))))))))).................((((((((..(((...(((((....)))))))))))))))).. (-20.88 = -21.52 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:07 2006