Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,813,075 – 5,813,195 |
Length | 120 |
Max. P | 0.943344 |
Location | 5,813,075 – 5,813,195 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -37.85 |
Consensus MFE | -35.93 |
Energy contribution | -36.33 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.95 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5813075 120 - 22407834 UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU ....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61) >DroSec_CAF1 12209 120 - 1 UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU ....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61) >DroSim_CAF1 11323 120 - 1 UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU ....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61) >DroEre_CAF1 36157 120 - 1 UUGAAUUUCGUGAGCAAAAUGCCAAGCGAAACGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAG ....(((((((((((.....(((........((((........))))..........((....)).....)))......)))))))))))...(((.......)))..(((....))).. ( -38.80) >DroYak_CAF1 36369 120 - 1 UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU ....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... ( -37.61) >consensus UUGAAUUUCGUGAGGAAAAUGCCAAGCGAAAUGCCGGCAAUGAGGCGAUCCAAAUAAGCUGCAGCCCACAGGCCAUAUGGCUCAUGAAAUCCCGGCAAUGCAGGCCAGCGGGAAACCGAU ....(((((((..((......))..)))))))((.(((.....((....)).......((((((((((..((((....))))..)).......)))..)))))))).))((....))... (-35.93 = -36.33 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:06 2006