Locus 2157

Sequence ID 2L_DroMel_CAF1
Location 5,811,036 – 5,811,156
Length 120
Max. P 0.681003
window3487

overview

Window 7

Location 5,811,036 – 5,811,156
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.28
Mean single sequence MFE -28.66
Consensus MFE -25.60
Energy contribution -26.41
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -1.65
Structure conservation index 0.89
SVM decision value 0.31
SVM RNA-class probability 0.681003
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5811036 120 - 22407834
CGAAAAAUACAUUGCGGAAGUCCAUAUAACAGGAUAUUUAUAAAUGAAAAUCCCUUAACUUUCAGCAGUGACCACAAGCAUGAGUUCAUGGGCUUCGCCGAAGCCGGAAGUCACUGAGCA
............(((((((((.....(((..((((.((((....)))).)))).)))))))))..(((((((......((((....))))((((((...))))))....))))))).))) ( -31.90)
>DroSec_CAF1 10031 117 - 1
CGAAAAAUACAUUGCGGAAGUCCAUAUAAC---AUAUUUAUAAAUGAAAAUCCCCUAACUUUCAGCAGUGACCACAAGCAUGAGUUCAUGGGCUUCGCCGAAGCAGGAAGUCACUGAGCA
............(((((((((...(((((.---....))))).((....))......))))))..(((((((......((((....)))).(((((...))))).....))))))).))) ( -24.80)
>DroEre_CAF1 33612 120 - 1
CGAAAAACACAUUGCGGAAGUCCAUAUAACAGGAUAUUUAUAAAUGAAAAUCCCCUAACUUUCCCCAGUGACCACAAGCAAGAGUUCAUGGGCUUCGCCGAAGCCGGAAGUCACUGAGCA
............(((((((((.......)).((((.((((....)))).)))).......)))).(((((((((..(((....)))..))((((((...))))))....))))))).))) ( -28.10)
>DroYak_CAF1 34045 120 - 1
CGAAAAAUACAUUGCGGAAGUCCAUAUAACAGGAUAUUUAUAAAUGAAAAUCCCCUAACUUUCACCAGUGACCACAAGCAUGAGUUUAUGGGCUUCUCCGAAGCCGGAAGUCACUGAGCA
............(((((((((..........((((.((((....)))).))))....))))))..(((((((((.((((....)))).))((((((...))))))....))))))).))) ( -29.84)
>consensus
CGAAAAAUACAUUGCGGAAGUCCAUAUAACAGGAUAUUUAUAAAUGAAAAUCCCCUAACUUUCACCAGUGACCACAAGCAUGAGUUCAUGGGCUUCGCCGAAGCCGGAAGUCACUGAGCA
............(((((((((..........((((.((((....)))).))))....))))))..(((((((......((((....))))((((((...))))))....))))))).))) (-25.60 = -26.41 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:05 2006