Locus 2156

Sequence ID 2L_DroMel_CAF1
Location 5,806,283 – 5,806,387
Length 104
Max. P 0.546828
window3486

overview

Window 6

Location 5,806,283 – 5,806,387
Length 104
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 76.65
Mean single sequence MFE -29.84
Consensus MFE -14.65
Energy contribution -16.22
Covariance contribution 1.57
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.49
SVM decision value 0.03
SVM RNA-class probability 0.546828
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5806283 104 - 22407834
CGUGUGAUUGCAUCUGGAAUUACGCCAGAAA-AGAGGCAACUAGAAAUUUGGUACGUCGGAAGUUAAGUUGGAGAAAUGUGACAUCGCACCAGUUUCAAAACUGU------------
.(((((((.((.(((((......((((((..-..((....)).....))))))...))))).))...((((.(....).)))))))))))(((((....))))).------------ ( -26.40)
>DroSec_CAF1 5398 116 - 1
CGUGUCAUUGAAUCUGGAAUUACGCCAGAAA-AGAGGCAACUAAAAAUUUGGUGAGUCGAAAGUUAAGUUGGAGAAAUCUGGAAUCGCGCCAAUUUCCAAAAUGUGCGGCGAAUGCC
((..((((..(((((((.......)))))..-..((....)).....))..))))..))...((....(((((((....(((.......))).))))))).....))(((....))) ( -26.60)
>DroSim_CAF1 5411 116 - 1
CGUGUCAUUGAAUCUGGAAUUACGCCAGCAA-AGAGGCAACUAGAAAUUUGGUGCGUCGAAAGUUAAGUAGGAGAAAUCGGGCAUCGCACCAAUUUCCAAAAUGUGCGGCGAAUGCC
...............((.(((.((((.(((.-..((....)).((((((.((((((.(....)....((..((....))..))..)))))))))))).......)))))))))).)) ( -32.80)
>DroEre_CAF1 28910 86 - 1
CGUGUCAUUGAAUCUGGAAAAGCGCCAGAAA-AGAGGCAGCUAGAAGUUUG------------UUAAGUAGCAGAAAUCUGGCAGCGCACCAGUUUCAU------------------
........((((.((((....(((((.....-...))).((((((..((((------------((....))))))..)))))).))...)))).)))).------------------ ( -29.30)
>DroYak_CAF1 29235 117 - 1
CGUGUCAUUGAAUCUGGAAUACCGCCAGAAAAAAAGGCAACUAGAAAUUUGGUGCUUCGAAAGUUAAGUAGGAGAAAUCUGGCAUCGCGCCAGUUUCAUAACUGUGCACCAAAUGCC
..((((.((...(((((.......)))))...)).)))).......(((((((((..(....)..........((((.(((((.....)))))))))........)))))))))... ( -34.10)
>consensus
CGUGUCAUUGAAUCUGGAAUUACGCCAGAAA_AGAGGCAACUAGAAAUUUGGUGCGUCGAAAGUUAAGUAGGAGAAAUCUGGCAUCGCACCAGUUUCAAAAAUGUGC__C_AAUGCC
..((((.((...(((((.......)))))...)).))))....((((((.(((((..(....)....((..((....))..))...))))))))))).................... (-14.65 = -16.22 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:04 2006