Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,803,409 – 5,803,513 |
Length | 104 |
Max. P | 0.500000 |
Location | 5,803,409 – 5,803,513 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 61.74 |
Mean single sequence MFE | -36.56 |
Consensus MFE | -18.89 |
Energy contribution | -19.58 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.61 |
Mean z-score | -1.32 |
Structure conservation index | 0.52 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5803409 104 - 22407834 CGGAACCGAUGCCGAUAC----CUGUGCGGGCACCGGCGCUGG---CAUGCCU-------CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACCG (((.......((.(((((----(.(((.((.(((..((((..(---(......-------..))..))))..))).)).)))....))))))...))..((((....))))....))) ( -32.60) >DroGri_CAF1 2176 103 - 1 -----CUGCU---GGUGGCAACAACCGAGGGCGGUUGCAUGCUCGCAGCACCAUUGCUGU-------UGUUGGUGGCAACACUGAUUGUGUUGUUGGUGCUGUUGAUGUAUGCCACGG -----.....---.(((((..((((((....)))))).(((((((((((((((..((...-------.((..(((....)))..))...))...)))))))).))).))))))))).. ( -47.20) >DroSec_CAF1 2620 104 - 1 CGGAACCGGUGCUGAUAC----CUGUGCGGGCACCGGCGCUGG---CAUUCCU-------CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACCG (((...((((..((((((----(.(((.((.(((..((((..(---(......-------..))..))))..))).)).)))....)))))))..))))((((....))))....))) ( -37.20) >DroSim_CAF1 2629 104 - 1 CGGAACCGGUGCUGAUAC----CUGUGCGGGUACCGGCGCUGG---CAUGCCU-------CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACAG ((((.(((((((((.(((----((....))))).)))))))))---......)-------)))........(((((((.....((((((((....)).))))))......))))))). ( -38.40) >DroWil_CAF1 2948 83 - 1 CGCAACGGACGGUAAU-------UG----ACCACCGCCGCCG------------------------CCAUUGGUGGCAACUGAAAUGGUAUUAUUCGUACUAUUUAUAUAGGCGACAG (((...((.((((...-------..----...))))))((((------------------------((...))))))..((((((((((((.....)))))))))...)))))).... ( -27.40) >consensus CGGAACCGAUGCUGAUAC____CUGUGCGGGCACCGGCGCUGG___CAUGCCU_______CCGUUUGCGUUUGUGGCCACGCUGAUGGUGUUAUUGCUGCUAUUGAUAUAGGCUACAG (((..((((((((..(((......)))..))))))))..)))..............................((((((....((((((((.......)))))))).....)))))).. (-18.89 = -19.58 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:03 2006