Locus 2154

Sequence ID 2L_DroMel_CAF1
Location 5,800,134 – 5,800,240
Length 106
Max. P 0.814545
window3484

overview

Window 4

Location 5,800,134 – 5,800,240
Length 106
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 95.28
Mean single sequence MFE -31.37
Consensus MFE -29.40
Energy contribution -29.73
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.94
SVM decision value 0.66
SVM RNA-class probability 0.814545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5800134 106 - 22407834
AGUCGCUCUCUUAGCGCACAAUGCGCUCUCUGCCAACCGAAAUGCCACAGACUUUUUGUAGGCUUUUCCACUUUUUCGAUUUCGAGACUUCGAGCGAAACGGUCGU
..((((((....(((((.....)))))...........((((.((((((((...))))).))).)))).....(((((....)))))....))))))......... ( -29.60)
>DroSec_CAF1 37543 106 - 1
AAACCCUCUCUUAGCGCGCAAAGCGCUCUCUGGCGACCGAAAUGCCACAGACUUUUUGUAGGCUUUUCCACUUUUUCGAUUUCGAGACUUCGAGCGAAACGGUCGU
............(((((.....))))).....((((((((((.((((((((...))))).))).)))).....(((((...(((......))).))))).)))))) ( -33.00)
>DroSim_CAF1 39817 106 - 1
AAGCCCUCUCUUAGCGCGCAAAGCGCUCUCUGCCGACCGAAAUGCCACAGACUUUUUGUAGGCUUUUCCACUUUUUCGAUUUCGAGACUUCGAGCGAAACGGUCGU
............(((((.....)))))......(((((((((.((((((((...))))).))).)))).....(((((...(((......))).))))).))))). ( -31.50)
>consensus
AAACCCUCUCUUAGCGCGCAAAGCGCUCUCUGCCGACCGAAAUGCCACAGACUUUUUGUAGGCUUUUCCACUUUUUCGAUUUCGAGACUUCGAGCGAAACGGUCGU
............(((((.....)))))......(((((((((.((((((((...))))).))).)))).....(((((...(((......))).))))).))))). (-29.40 = -29.73 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:02 2006