Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,799,332 – 5,799,430 |
Length | 98 |
Max. P | 0.669560 |
Location | 5,799,332 – 5,799,430 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 68.09 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -12.81 |
Energy contribution | -13.04 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.21 |
Mean z-score | -2.18 |
Structure conservation index | 0.45 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5799332 98 + 22407834 GUUGUUGCUGUCGCCUCGCUAUGCUUUG----CUUUGCUGACCGUUUUCUAUGAAUGAAAGAGGCGC---UGGGCAAAAGCAACAACUGCAACAAAA-CAGUAAAA-------- (((((((((...((((.((...((....----....)).(.((.(((((.......))))).)))))---.))))...)))))))))..........-........-------- ( -28.90) >DroSec_CAF1 36569 96 + 1 GUUGUUGCUGUCGCCUCGCUUUG---------CUUUGCUGACCGUUUUCUAUGAAUGAAAGAGGCGC---UGGGCAAAAGCAACAACUGCAACAAAG-CAGUAAAA-----AAA ..(((((((...((((.((...(---------((((......(((((.....)))))...)))))))---.))))...)))))))(((((......)-))))....-----... ( -30.10) >DroAna_CAF1 23306 108 + 1 GUUGUUUUU------UUAUUGUGUUUUGUGUCUUCUGCUGACCGUUUUCUAUGAAUGGAAGAGACGAGAGCAGGCGAUAAAAUCAAAUGCAACAAAAACAAGAGACAAACAACA (((((((.(------((.((((.((((((((((.((.....((((((.....)))))).))))))....(((...(((...)))...))).)))))))))).))).))))))). ( -26.70) >consensus GUUGUUGCUGUCGCCUCGCUAUG_UUUG____CUUUGCUGACCGUUUUCUAUGAAUGAAAGAGGCGC___UGGGCAAAAGCAACAACUGCAACAAAA_CAGUAAAA_____A_A (((((((((...((((((((.................((...(((((.....)))))..)).)))).....))))...)))))))))........................... (-12.81 = -13.04 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:01 2006