Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,794,978 – 5,795,097 |
Length | 119 |
Max. P | 0.938283 |
Location | 5,794,978 – 5,795,097 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -39.34 |
Energy contribution | -39.57 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -2.16 |
Structure conservation index | 0.98 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5794978 119 + 22407834 UUCACUUAACA-GGAAUCCAAGCCGAGUUAAGGCACAGUGUUCAAAUCCCAUCAAAGGUGGUGCCGGGCGCUCACGAGUCGGAUUCUUUGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA .(((((((...-(((((((..(((.......)))..(((((((.....((((.....))))....)))))))........)))))))((.(((((...))))).))...))))))).... ( -39.80) >DroSec_CAF1 32051 118 + 1 UUCACUUAACAAGGAAUCCAAGCCGAGUUGAGGC--AGUGUUCAAAUCCCAUCAAAGGUGGUGCCGGGCGUUCACGAGUCGGAUUCUUAGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA .(((((((...((((((((..(((.......)))--.(((..(.....((((.....)))).((...)))..))).....))))))))..(((((...)))))......))))))).... ( -36.90) >DroSim_CAF1 34580 120 + 1 UUCACUUAACAAGGAAUCCAAGCCGAGUUGAGGCACAGUGUUCAAAUCCCAUCAAAGGUGAUGCCGGGCGCUCACGAGUCGGAUUCUUUGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA .(((((((.((((((((((..(((.......)))..(((((((..(((((......)).)))...)))))))........))))))))))(((((...)))))......))))))).... ( -43.90) >consensus UUCACUUAACAAGGAAUCCAAGCCGAGUUGAGGCACAGUGUUCAAAUCCCAUCAAAGGUGGUGCCGGGCGCUCACGAGUCGGAUUCUUUGCCAGCUUAGCUGGGGACAAUAAGUGAUGAA .(((((((.((((((((((..(((.......)))..(((((((..(((((......)).)))...)))))))........))))))))))(((((...)))))......))))))).... (-39.34 = -39.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:55 2006