Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 621,395 – 621,767 |
Length | 372 |
Max. P | 0.999928 |
Location | 621,395 – 621,513 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.57 |
Mean single sequence MFE | -29.42 |
Consensus MFE | -17.73 |
Energy contribution | -18.40 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.14 |
Mean z-score | -1.75 |
Structure conservation index | 0.60 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 621395 118 + 22407834 --UCUAAUAAAUACAUAACUGGCGAAAAAGAAUGCAGGUAGGAGCACUGCAGAGUUGCUUCUGACCAAUUCACCUACAAUCGAUCAAACGAUAGUCGGGAAAGCGGCGGAUAAACCGCUC --...................((......((((...((((((((((((....)).))))))).))).)))).(((((.((((......)))).)).)))...))(((((.....))))). ( -31.00) >DroSec_CAF1 10619 118 + 1 --UGUAAUAAAUACAUCGCUGGCGAAAAAGAAUGCAGGCAAGAGCGAUGCAGAGUUGCUUCUGACCAAUUCACCUACAAUCGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUC --((((.....)))).((((.........((((...((((..((((((.....))))))..)).)).)))).(((.....(((((....)))))..)))..))))((((.....)))).. ( -32.90) >DroSim_CAF1 9832 118 + 1 --UGUAAUAAAUACAUCAGUAGCGAAAAAGAAUGCAGGCAAGAGCGAUGCAGAGUUGCUUCUGACCAAUUCACCUACAAUCGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUC --((((.....))))......((......((((...((((..((((((.....))))))..)).)).)))).(((.....(((((....)))))..)))...))(((((.....))))). ( -31.10) >DroEre_CAF1 14189 92 + 1 GACGUACUUAAAACUUUACUGGCGAAAAGGAAUGUA----------------------------CGAAUUCACCUACAAUCGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUC .............((((.(((((......((.((((----------------------------.(......).)))).))((((....))))))))).)))).(((((.....))))). ( -21.60) >DroYak_CAF1 13176 120 + 1 GACGUAAUAAACACUUUACUGGCGAAAAAGAAUGUAGGCAGAAAAGAUGCAGUGACGCUUCUGACCAAUUCACCUACAAUCAAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUC ...........(.((((.(((((((....((.((((((..(((.(((.((......)).)))......))).)))))).))..((....))))))))).)))).)((((.....)))).. ( -30.50) >consensus __UGUAAUAAAUACAUCACUGGCGAAAAAGAAUGCAGGCAAGAGCGAUGCAGAGUUGCUUCUGACCAAUUCACCUACAAUCGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUC .....................((......((((...((((.(((((.........))))).)).)).)))).(((((.(((........))).)).)))...))(((((.....))))). (-17.73 = -18.40 + 0.67)
Location | 621,395 – 621,513 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.57 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -21.83 |
Energy contribution | -22.68 |
Covariance contribution | 0.85 |
Combinations/Pair | 1.23 |
Mean z-score | -1.58 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 621395 118 - 22407834 GAGCGGUUUAUCCGCCGCUUUCCCGACUAUCGUUUGAUCGAUUGUAGGUGAAUUGGUCAGAAGCAACUCUGCAGUGCUCCUACCUGCAUUCUUUUUCGCCAGUUAUGUAUUUAUUAGA-- (((((((......)))))))..((.((.((((......)))).)).))..(((((((.(((((((....)))(((((........)))))..)))).)))))))..............-- ( -30.00) >DroSec_CAF1 10619 118 - 1 GAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCGAUUGUAGGUGAAUUGGUCAGAAGCAACUCUGCAUCGCUCUUGCCUGCAUUCUUUUUCGCCAGCGAUGUAUUUAUUACA-- ..((((.....))))((((....(((.((((....))))((.((((((..(..((((((((......)))).))))...)..)))))).))....)))..)))).((((.....))))-- ( -35.70) >DroSim_CAF1 9832 118 - 1 GAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCGAUUGUAGGUGAAUUGGUCAGAAGCAACUCUGCAUCGCUCUUGCCUGCAUUCUUUUUCGCUACUGAUGUAUUUAUUACA-- (((((((......)))))))...(((.((((....))))((.((((((..(..((((((((......)))).))))...)..)))))).))....))).......((((.....))))-- ( -34.10) >DroEre_CAF1 14189 92 - 1 GAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCGAUUGUAGGUGAAUUCG----------------------------UACAUUCCUUUUCGCCAGUAAAGUUUUAAGUACGUC (((((((......)))))))((((.((((((........)))))).)).))...((----------------------------(((....((((.(....).))))......))))).. ( -22.80) >DroYak_CAF1 13176 120 - 1 GAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUUGAUUGUAGGUGAAUUGGUCAGAAGCGUCACUGCAUCUUUUCUGCCUACAUUCUUUUUCGCCAGUAAAGUGUUUAUUACGUC (((((((......)))))))....(((((((....))))((.((((((((((..((((((........))).)))..))).))))))).))..........((((........))))))) ( -31.80) >consensus GAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCGAUUGUAGGUGAAUUGGUCAGAAGCAACUCUGCAUCGCUCCUGCCUGCAUUCUUUUUCGCCAGUAAUGUAUUUAUUACA__ (((((((......)))))))...(((.((((....))))((.((((((((....((...((.(((....))).))...)))))))))).))....)))...................... (-21.83 = -22.68 + 0.85)
Location | 621,473 – 621,581 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -28.60 |
Energy contribution | -29.16 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.33 |
Structure conservation index | 0.82 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 621473 108 + 22407834 CGAUCAAACGAUAGUCGGGAAAGCGGCGGAUAAACCGCUCAUCGUACGGUAUUG----GAGCAUGUGGCAUCGUUCUGAGAACCGACUGCCAUUCCGCUCCCUCAUCUUUUU-------- .............(((((...(((((........)))))..))).))(((...(----((((..((((((((((((...))).))).))))))...)))))...))).....-------- ( -31.70) >DroSec_CAF1 10697 112 + 1 CGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUCAUCUUACGGUAUUGGAUGGAGCAUGUGGCAUCGUUCUGAGAACCGACUGCCAUUCCGCUCUCUCAUCUUUUU-------- (((((....)))))..((((.(((((.((.....))((((((((.........)))).))))..((((((((((((...))).))).)))))).))))).))))........-------- ( -37.00) >DroSim_CAF1 9910 116 + 1 CGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUCAUCGUACGGUAUUG----GAGCAUGUGGCAUCGUUCUGAGAACCGACUGCCAUUCCGCUCCCUCAUCUUUUUUUUCCUAG (((((....)))))..(((((((.(((((.....)))))........(((...(----((((..((((((((((((...))).))).))))))...)))))...)))....))))))).. ( -38.70) >DroEre_CAF1 14241 107 + 1 CGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUCAUCGUACGGUAUUG----GAGCAUGUGGUAUCGUUCUGAGAACCGACUGCCUUUCCGCUCCCUCAUCUUUU--------- (((((....))))).((((((.(((((((.....)))))....((.((((.(..----((((..........))))..)..)))))).)).))))))..............--------- ( -32.40) >DroYak_CAF1 13256 110 + 1 CAAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUCAUCGUACGGUAUUG----GAGCAUGUGGUAUCGUUCUGAGAACCGACUGCCAUUCCGCUCCCUCAUCUUUUUUU------ .....(((((((((((((...(((((........)))))..))).))).....(----((((..((((((((((((...))).))).))))))...)))))...)))))))...------ ( -34.20) >consensus CGAUCAAAAGAUCGUCGGGAAAGCGGCGGAUAAACCGCUCAUCGUACGGUAUUG____GAGCAUGUGGCAUCGUUCUGAGAACCGACUGCCAUUCCGCUCCCUCAUCUUUUU________ .....(((((((((((((...(((((........)))))..))).)))..........((((..((((((((((((...))).))).))))))...))))....)))))))......... (-28.60 = -29.16 + 0.56)
Location | 621,473 – 621,581 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -36.64 |
Consensus MFE | -29.08 |
Energy contribution | -30.08 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.79 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 621473 108 - 22407834 --------AAAAAGAUGAGGGAGCGGAAUGGCAGUCGGUUCUCAGAACGAUGCCACAUGCUC----CAAUACCGUACGAUGAGCGGUUUAUCCGCCGCUUUCCCGACUAUCGUUUGAUCG --------....((((((.((((((...(((((.(((.(((...)))))))))))..)))))----)......((.((..(((((((......)))))))...))))..))))))..... ( -36.40) >DroSec_CAF1 10697 112 - 1 --------AAAAAGAUGAGAGAGCGGAAUGGCAGUCGGUUCUCAGAACGAUGCCACAUGCUCCAUCCAAUACCGUAAGAUGAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCG --------.(((((((((..(((((...(((((.(((.(((...)))))))))))..)))))..))......(((..(..(((((((......)))))))..)..))))))))))..... ( -36.80) >DroSim_CAF1 9910 116 - 1 CUAGGAAAAAAAAGAUGAGGGAGCGGAAUGGCAGUCGGUUCUCAGAACGAUGCCACAUGCUC----CAAUACCGUACGAUGAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCG ....((...(((((((...((((((...(((((.(((.(((...)))))))))))..)))))----).....(((.((..(((((((......)))))))...))))))))))))..)). ( -40.90) >DroEre_CAF1 14241 107 - 1 ---------AAAAGAUGAGGGAGCGGAAAGGCAGUCGGUUCUCAGAACGAUACCACAUGCUC----CAAUACCGUACGAUGAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCG ---------(((((((...((((((....((..((((.(((...))))))).))...)))))----).....(((.((..(((((((......)))))))...))))))))))))..... ( -33.50) >DroYak_CAF1 13256 110 - 1 ------AAAAAAAGAUGAGGGAGCGGAAUGGCAGUCGGUUCUCAGAACGAUACCACAUGCUC----CAAUACCGUACGAUGAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUUG ------...(((((((...((((((...(((..((((.(((...))))))).)))..)))))----).....(((.((..(((((((......)))))))...))))))))))))..... ( -35.60) >consensus ________AAAAAGAUGAGGGAGCGGAAUGGCAGUCGGUUCUCAGAACGAUGCCACAUGCUC____CAAUACCGUACGAUGAGCGGUUUAUCCGCCGCUUUCCCGACGAUCUUUUGAUCG .........(((((((....(((((...(((((.(((.(((...)))))))))))..)))))..........(((.....(((((((......))))))).....))))))))))..... (-29.08 = -30.08 + 1.00)
Location | 621,581 – 621,687 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.68 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -19.88 |
Energy contribution | -20.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.94 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 621581 106 + 22407834 --------------UUUCUUAGCUCCGCUGAGCAGCUGCAGAAGCAACAAAAACAUUAGAAUUGCUAAAAGAUACUCAAAAUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCAC --------------....(((((((((((((((((((.....)))........(....)...))))....(((.......)))..)))))))......)))))................. ( -20.60) >DroSec_CAF1 10809 108 + 1 ------------UCUUUCUUAGCUCCGCUGAGCAGCUGCAGAAGCAACAAAAACAUUAGAAUUGCUAAAAGAUACUCAAAAUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCAC ------------......(((((((((((((((((((.....)))........(....)...))))....(((.......)))..)))))))......)))))................. ( -20.60) >DroSim_CAF1 10373 120 + 1 UCCCUCAUCUUUUUUUUCCUAGCUCCGCUGAGCAGCUGCAGAAGCAACAAAAACAUUAGAAUUGCUAAAAGAUACUCAAAAUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCAC ......(((((((.((((..(((((((((((((((((.....)))........(....)...))))....(((.......)))..)))))))......)))))))....)))).)))... ( -19.90) >DroEre_CAF1 14348 108 + 1 ------------UUUUGCUUAGCUCCGCUGAGCAGCUGCAGCAGCAACAAAAACAUUAGAAUUGCUAAAAGAUACUCAAAAUCACCAGCGGACAACGAGCUGAAAUGUUAAAACGAUCAC ------------...((((((((...))))))))((((...))))......((((((.............(((.......)))..((((.........)))).))))))........... ( -22.40) >DroYak_CAF1 13366 110 + 1 ----------UUUUUUGCUUAGCUCCGCUGAGCAGCUGCAGCAGCAACAAAAACAUUAGAAUUGCUAAAAGAUACUCAAAAUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCAC ----------.((((.((((...(((((((((((((((...))))........(....)...))))....(((.......)))..)))))))....)))).))))............... ( -22.50) >consensus ____________UUUUUCUUAGCUCCGCUGAGCAGCUGCAGAAGCAACAAAAACAUUAGAAUUGCUAAAAGAUACUCAAAAUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCAC ..................(((((((((((((((((((.....)))........(....)...))))....(((.......)))..)))))))......)))))................. (-19.88 = -20.08 + 0.20)
Location | 621,647 – 621,767 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -39.10 |
Consensus MFE | -39.26 |
Energy contribution | -39.30 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -3.46 |
Structure conservation index | 1.00 |
SVM decision value | 4.61 |
SVM RNA-class probability | 0.999928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 621647 120 + 22407834 AUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCACGUUUUCCUGCAGCAGCAACAACAUUAGUGUGGAAAUCCUUGCGCUGGAGAAAAGCUAGGAAAAAUCUCAGCUGCCGUUGA .....((((((.(.....((((...(((.((((((....))))))...))).)))).......(((((((((....))..))))))).....((((..((....))..))))))))))). ( -33.90) >DroSec_CAF1 10877 120 + 1 AUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCACGUUUUCCUGCAGCAGCAAGAACUUCAGUGUGGAAAUCCUUGCGCUGGAGAAAAGCUAGGAAAAAUCUCAGCUGCCGUUGA .....((((((.(.....((((...(((.((((((....))))))...))).)))).....(((((((((((....))..)))))))))...((((..((....))..))))))))))). ( -40.40) >DroSim_CAF1 10453 120 + 1 AUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCACGUUUUCCUGCAGCAGCAACAACUUCAGUGUGGAAAUCCUUGCGCUGGAGAAAAGCUAGGAAAAAUCUCAGCUGCCGUUGA .....((((((.(.....((((...(((.((((((....))))))...))).)))).....(((((((((((....))..)))))))))...((((..((....))..))))))))))). ( -40.40) >DroEre_CAF1 14416 120 + 1 AUCACCAGCGGACAACGAGCUGAAAUGUUAAAACGAUCACGUUUUCCUGCAGCAGCAACAACUUCAGUGUGGAAAUCCUUGCGCUGGAGAAAAGCUAGGAAAAAUCUCAGCUGCCGUUGA .....((((((.(.....((((...(((.((((((....))))))...))).)))).....(((((((((((....))..)))))))))...((((..((....))..))))))))))). ( -40.40) >DroYak_CAF1 13436 120 + 1 AUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCACGUUUUCCUGCAGCAGCAACAACUUCAGUGUGGAAAUCCUUGCGCUGGAGAAAAGCUAGGAAAAAUCUCAGCUGCCGUUGA .....((((((.(.....((((...(((.((((((....))))))...))).)))).....(((((((((((....))..)))))))))...((((..((....))..))))))))))). ( -40.40) >consensus AUCACCAGCGGACAACAAGCUGAAAUGUUAAAACGAUCACGUUUUCCUGCAGCAGCAACAACUUCAGUGUGGAAAUCCUUGCGCUGGAGAAAAGCUAGGAAAAAUCUCAGCUGCCGUUGA .....((((((.(.....((((...(((.((((((....))))))...))).)))).....(((((((((((....))..)))))))))...((((..((....))..))))))))))). (-39.26 = -39.30 + 0.04)
Location | 621,647 – 621,767 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -35.64 |
Energy contribution | -36.04 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.96 |
SVM decision value | 2.76 |
SVM RNA-class probability | 0.996843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 621647 120 - 22407834 UCAACGGCAGCUGAGAUUUUUCCUAGCUUUUCUCCAGCGCAAGGAUUUCCACACUAAUGUUGUUGCUGCUGCAGGAAAACGUGAUCGUUUUAACAUUUCAGCUUGUUGUCCGCUGGUGAU (((.(((((((((((((.............(((.((((((((.(((............))).)))).)))).)))((((((....))))))...)))))))))........)))).))). ( -32.20) >DroSec_CAF1 10877 120 - 1 UCAACGGCAGCUGAGAUUUUUCCUAGCUUUUCUCCAGCGCAAGGAUUUCCACACUGAAGUUCUUGCUGCUGCAGGAAAACGUGAUCGUUUUAACAUUUCAGCUUGUUGUCCGCUGGUGAU (((.(((((((((((((.............(((.(((((((((((((((......))))))))))).)))).)))((((((....))))))...)))))))))........)))).))). ( -40.60) >DroSim_CAF1 10453 120 - 1 UCAACGGCAGCUGAGAUUUUUCCUAGCUUUUCUCCAGCGCAAGGAUUUCCACACUGAAGUUGUUGCUGCUGCAGGAAAACGUGAUCGUUUUAACAUUUCAGCUUGUUGUCCGCUGGUGAU (((.(((((((((((((.............(((.((((((((.((((((......)))))).)))).)))).)))((((((....))))))...)))))))))........)))).))). ( -37.40) >DroEre_CAF1 14416 120 - 1 UCAACGGCAGCUGAGAUUUUUCCUAGCUUUUCUCCAGCGCAAGGAUUUCCACACUGAAGUUGUUGCUGCUGCAGGAAAACGUGAUCGUUUUAACAUUUCAGCUCGUUGUCCGCUGGUGAU (((.(((((((((((((.............(((.((((((((.((((((......)))))).)))).)))).)))((((((....))))))...)))))))))........)))).))). ( -37.40) >DroYak_CAF1 13436 120 - 1 UCAACGGCAGCUGAGAUUUUUCCUAGCUUUUCUCCAGCGCAAGGAUUUCCACACUGAAGUUGUUGCUGCUGCAGGAAAACGUGAUCGUUUUAACAUUUCAGCUUGUUGUCCGCUGGUGAU (((.(((((((((((((.............(((.((((((((.((((((......)))))).)))).)))).)))((((((....))))))...)))))))))........)))).))). ( -37.40) >consensus UCAACGGCAGCUGAGAUUUUUCCUAGCUUUUCUCCAGCGCAAGGAUUUCCACACUGAAGUUGUUGCUGCUGCAGGAAAACGUGAUCGUUUUAACAUUUCAGCUUGUUGUCCGCUGGUGAU (((.(((((((((((((.............(((.((((((((.((((((......)))))).)))).)))).)))((((((....))))))...)))))))))........)))).))). (-35.64 = -36.04 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:09 2006