Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,791,102 – 5,791,214 |
Length | 112 |
Max. P | 0.952417 |
Location | 5,791,102 – 5,791,214 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 93.43 |
Mean single sequence MFE | -22.43 |
Consensus MFE | -21.62 |
Energy contribution | -21.73 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.23 |
Structure conservation index | 0.96 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5791102 112 + 22407834 GAGUGCAUUAAACUUCUAACAGCAAAUUGCUUUUAAUUCCUAAAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUUAAAAAAAAAUCCGCGUAAACUGUUUUGCAAAAU (((((((((((..((((((.(((..((((((((........)))).)))).....))).)).)))))))).)))))))...............(((((....)))))..... ( -17.30) >DroSec_CAF1 28157 111 + 1 AAGUGCAUCAAACUUCAAACAGCAAACUGCUUUUAAUUCCUAGAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUGAAAA-AAAAUACGCGUAAACAGUUUUGCGAAAU (((((((.............(((.....))).(((((((..((((((......).)))))...))))))).))))))).....-........((((((....)))))).... ( -25.00) >DroSim_CAF1 30286 110 + 1 AAGUGCAUCAAACUUCUAACAGCAAAUUGCUUUUAAUUCCUAGAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUGAAAA--AAAUCCGCGUAAACAGUUUUGCGAAAU (((((((.............(((.....))).(((((((..((((((......).)))))...))))))).))))))).....--.......((((((....)))))).... ( -25.00) >consensus AAGUGCAUCAAACUUCUAACAGCAAAUUGCUUUUAAUUCCUAGAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUGAAAA_AAAAUCCGCGUAAACAGUUUUGCGAAAU (((((((.............(((.....))).(((((((..((((((......).)))))...))))))).)))))))...............(((((....)))))..... (-21.62 = -21.73 + 0.11)
Location | 5,791,102 – 5,791,214 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 93.43 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -25.31 |
Energy contribution | -25.53 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.94 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5791102 112 - 22407834 AUUUUGCAAAACAGUUUACGCGGAUUUUUUUUUAAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUUUAGGAAUUAAAAGCAAUUUGCUGUUAGAAGUUUAAUGCACUC ..(((((............)))))...........((((((.((((((((..((((((.......)))))).)))))))).(((.....))).............)))))). ( -23.00) >DroSec_CAF1 28157 111 - 1 AUUUCGCAAAACUGUUUACGCGUAUUUU-UUUUCAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUCUAGGAAUUAAAAGCAGUUUGCUGUUUGAAGUUUGAUGCACUU .....((((((((((((....((((((.-.....))))))..((((((((..((((((.......)))))).)))))))))))))))))(((......)))....))).... ( -29.50) >DroSim_CAF1 30286 110 - 1 AUUUCGCAAAACUGUUUACGCGGAUUU--UUUUCAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUCUAGGAAUUAAAAGCAAUUUGCUGUUAGAAGUUUGAUGCACUU ..(((((............)))))...--.....(((((((.((((((((..((((((.......)))))).)))))))).(((.....))).............))))))) ( -28.40) >consensus AUUUCGCAAAACUGUUUACGCGGAUUUU_UUUUCAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUCUAGGAAUUAAAAGCAAUUUGCUGUUAGAAGUUUGAUGCACUU ..(((((............)))))..........(((((((.((((((((..((((((.......)))))).)))))))).(((.....))).............))))))) (-25.31 = -25.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:51 2006