Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,788,724 – 5,788,816 |
Length | 92 |
Max. P | 0.979607 |
Location | 5,788,724 – 5,788,816 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 95.02 |
Mean single sequence MFE | -39.90 |
Consensus MFE | -36.45 |
Energy contribution | -36.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -3.58 |
Structure conservation index | 0.91 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5788724 92 + 22407834 UCACCCAUUGAAUCCAUAGAAGGGCUCAUCCCAGCUCAGC--AGUUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGUUGGGG ...((((((((((((......(((......((((((....--)))))))))(((((((((((....)))))))))))..))))).))).)))). ( -35.90) >DroSec_CAF1 25778 93 + 1 UC-CCCAUUGAAUCCAUAGAAGGGCUCAACCCAGCUCAGCUCAGUUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGGUGGGG .(-((((((.(((((......((((.((((..(((...)))..))))))))(((((((((((....)))))))))))..)))))...))))))) ( -43.20) >DroSim_CAF1 27885 93 + 1 UC-CCCAUUGAAUCCAUAGAAGGGCUCAUCGCAGCUCAGCUCAGCUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGGUGGGG .(-((((((.(((((......((((......(((((......)))))))))(((((((((((....)))))))))))..)))))...))))))) ( -40.60) >consensus UC_CCCAUUGAAUCCAUAGAAGGGCUCAUCCCAGCUCAGCUCAGUUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGGUGGGG ...((((((((((((......((((......(((((......)))))))))(((((((((((....)))))))))))..))))).))).)))). (-36.45 = -36.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:49 2006