Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,784,863 – 5,784,983 |
Length | 120 |
Max. P | 0.671343 |
Location | 5,784,863 – 5,784,983 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -17.49 |
Energy contribution | -17.17 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.10 |
Mean z-score | -2.35 |
Structure conservation index | 0.79 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5784863 120 - 22407834 AAUAAACAUUCAUUACAAGUGGUCAAUUUGACUUGGUUAUUUGAAGUAUCGAAAUAUUUUGUUCGAAGUUCAAUACCAAAUGCGCCAAGUAACUAUAAAGCAAUAUACUUUAAUGAAUAA .......((((((((.((((((((.....)))(((((...(((((.(.(((((........)))))).))))).))))).(((................)))...))))))))))))).. ( -25.29) >DroSec_CAF1 21927 118 - 1 AAGAAAUUUUCAUUUU--GUGGUCAAUUUGACUUAGUUACUUGAAGUAACAAAAUAUCUUGUUUCAAGUUCAAUACCAAAUGCACCAAGUAACUAUAAACCAAUAUACUUUAAUGAAUAA ........((((((..--((((((.....))).((((((((((..(.(((((......))))).)..((.((........)).))))))))))))..........)))...))))))... ( -20.40) >DroSim_CAF1 22725 118 - 1 AAUAAACUUUCAUUAC--GUGGUCAAUUUGACUUGGUUACUUGAAGUAACAAAAUAUCUUGUUUCAAGUUCAAUACCAAAUGCACCAAGUAACUAUAAACCAAUAUACUUUAAUGAAUAA ........(((((((.--((((((.....)))(((((.(((((((...((((......))))))))))).....)))))...))).(((((..(((......)))))))))))))))... ( -20.60) >consensus AAUAAACUUUCAUUAC__GUGGUCAAUUUGACUUGGUUACUUGAAGUAACAAAAUAUCUUGUUUCAAGUUCAAUACCAAAUGCACCAAGUAACUAUAAACCAAUAUACUUUAAUGAAUAA ........(((((((...((((((.....))).((((((((((..(((.(((......)))......((.....))....)))..))))))))))..........)))..)))))))... (-17.49 = -17.17 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:45 2006