Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,783,598 – 5,783,697 |
Length | 99 |
Max. P | 0.901665 |
Location | 5,783,598 – 5,783,697 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 96.70 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -28.95 |
Energy contribution | -28.73 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.98 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5783598 99 + 22407834 GGCCACAAGGAUGCAAGGUAGUGAACCAUCUCCACUGGACGGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAAAA-- (((((....((.((..((.(((((.((.(((.....))).)).)))))..)).(((.((((....)))))))))))...)))))...............-- ( -29.80) >DroSec_CAF1 20687 101 + 1 GGCCACAAGGAUGCAAGGUAGUGAACCAUCUCCACUGGACGGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAAAAAA (((((....((.((..((.(((((.((.(((.....))).)).)))))..)).(((.((((....)))))))))))...)))))................. ( -29.80) >DroSim_CAF1 21462 100 + 1 GGCCACAAGGAUGCAAAGUAGUGAACCAUCUCCACUGGACAGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAA-AAA (((((...((.(((....(((((.........)))))((((((((.......)))))))).......))))).......))))).............-... ( -29.20) >consensus GGCCACAAGGAUGCAAGGUAGUGAACCAUCUCCACUGGACGGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAAAAAA (((((...((.(((....(((((.........)))))((((((((.......)))))))).......))))).......)))))................. (-28.95 = -28.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:44 2006