Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,781,727 – 5,781,827 |
Length | 100 |
Max. P | 0.786623 |
Location | 5,781,727 – 5,781,827 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -26.27 |
Energy contribution | -25.83 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.43 |
Structure conservation index | 0.98 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5781727 100 + 22407834 AGGCGGGCUGGUCCCAACAAUUUGCCAUAUUUAUUUUGUUUUUAUUGAAAAUAAUAGCUGAGUGAGUGAACGCUCAAAUGGCUGACUGAAGAAGUGCCUG (((((((.....)))..((.((.(((((.......((((((((...))))))))....((((((......)))))).))))).)).)).......)))). ( -25.60) >DroSec_CAF1 18816 100 + 1 AGGCGGGCUGGCCCAAACAAUUUGCCAUAUUUAUUUUGUUUUUAUUGAAAAUAAUAGAUGAGUGAGUGAACGCUCGAAUGGCUGACUGAAGAAGUGCCUG (((((((....)))...((.((.((((((((((((...((((....))))..)))))))(((((......)))))..))))).)).)).......)))). ( -28.40) >DroSim_CAF1 19581 100 + 1 AGGCGGGCUGGCCCCAACAAUUUGCCAUAUUUAUUUUGUUUUUAUUGAAAAUAAUAGCUGAGUGAGUGAACGCUCAAAUGGCUGACUGAAGAAGUGCCUG (((((((....)))...((.((.(((((.......((((((((...))))))))....((((((......)))))).))))).)).)).......)))). ( -26.60) >consensus AGGCGGGCUGGCCCCAACAAUUUGCCAUAUUUAUUUUGUUUUUAUUGAAAAUAAUAGCUGAGUGAGUGAACGCUCAAAUGGCUGACUGAAGAAGUGCCUG (((((((....)))...((.((.(((((.......((((((((...))))))))....((((((......)))))).))))).)).)).......)))). (-26.27 = -25.83 + -0.44)
Location | 5,781,727 – 5,781,827 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -22.87 |
Consensus MFE | -20.17 |
Energy contribution | -20.50 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.31 |
Structure conservation index | 0.88 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5781727 100 - 22407834 CAGGCACUUCUUCAGUCAGCCAUUUGAGCGUUCACUCACUCAGCUAUUAUUUUCAAUAAAAACAAAAUAAAUAUGGCAAAUUGUUGGGACCAGCCCGCCU .((((.......((((..((((((((((.(......).)))))...(((((((..........)))))))..)))))..))))..(((.....))))))) ( -22.40) >DroSec_CAF1 18816 100 - 1 CAGGCACUUCUUCAGUCAGCCAUUCGAGCGUUCACUCACUCAUCUAUUAUUUUCAAUAAAAACAAAAUAAAUAUGGCAAAUUGUUUGGGCCAGCCCGCCU .((((.......((((..(((((..(((.(......).))).....(((((((..........)))))))..)))))..))))...(((....))))))) ( -22.60) >DroSim_CAF1 19581 100 - 1 CAGGCACUUCUUCAGUCAGCCAUUUGAGCGUUCACUCACUCAGCUAUUAUUUUCAAUAAAAACAAAAUAAAUAUGGCAAAUUGUUGGGGCCAGCCCGCCU .((((....(..((((..((((((((((.(......).)))))...(((((((..........)))))))..)))))..))))..)(((....))))))) ( -23.60) >consensus CAGGCACUUCUUCAGUCAGCCAUUUGAGCGUUCACUCACUCAGCUAUUAUUUUCAAUAAAAACAAAAUAAAUAUGGCAAAUUGUUGGGGCCAGCCCGCCU .((((.......((((..(((((..(((.(......).))).....(((((((..........)))))))..)))))..))))...(((....))))))) (-20.17 = -20.50 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:42 2006