Locus 2140

Sequence ID 2L_DroMel_CAF1
Location 5,781,568 – 5,781,686
Length 118
Max. P 0.817676
window3461

overview

Window 1

Location 5,781,568 – 5,781,686
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -36.15
Consensus MFE -18.17
Energy contribution -19.43
Covariance contribution 1.25
Combinations/Pair 1.14
Mean z-score -2.30
Structure conservation index 0.50
SVM decision value 0.67
SVM RNA-class probability 0.817676
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5781568 118 - 22407834
AAGCAAAACUACAGAAAACGCUGUGCGCCUGCGCAGCACGCAACGCCAAAAGAAAAGCCGC--UGGCCAAGUCAAAGGCAGAGGCAAAGGCAAAAGCUGCUUCUCGGAUGCGGCUUAGUU
((((...............(((((((....))))))).((((...((.........(((..--((((...))))..)))(((((((...((....))))))))).)).)))))))).... ( -40.50)
>DroSec_CAF1 18653 118 - 1
CAGCAAAACUACAGAAAACGCUGUGCGCCUGCGCAACACGCAACGCCAAAAGAAAAGCCGC--UGGCCAAGUCAUAGGCAGAGGCAAAGGCAAAAGCUGCUUCUCGGACGCGGCUUAGUU
......((((((((......))))(((..((((.....)))).)))........(((((((--..(((........)))(((((((...((....))))))))).....))))))))))) ( -36.00)
>DroSim_CAF1 19425 112 - 1
CAGCAAAACUACAGAAAACGCUGUGCGCCUGCGCAACACGCAACGCCAAAAGAAAAGCCGC--UGGCCAAGUCACAG------GCAAAGGCAAAAGCUGCUUCUCGGACGUGGCUUAGUU
......(((((........((((((((....))).))).))...((((...((.((((.((--(.(((..((.....------))...)))...))).)))).)).....)))).))))) ( -33.30)
>DroWil_CAF1 35132 100 - 1
--------UAAUACCAAACGCAAUGCGCAUGCGCAACACGCAAUGCCAAAAGAGAAGCACCCAAGUCCAAGUCCCAG-------CUGGGGCUGGAGCU-----UGAGCUGUAGCUUCGUU
--------........(((....((.(((((((.....))).)))))).....(((((.....((..((((..((((-------(....)))))..))-----))..))...)))))))) ( -34.80)
>consensus
CAGCAAAACUACAGAAAACGCUGUGCGCCUGCGCAACACGCAACGCCAAAAGAAAAGCCGC__UGGCCAAGUCACAG______GCAAAGGCAAAAGCUGCUUCUCGGACGCGGCUUAGUU
...................((..((((....))))....))...(((.........(((.....)))...(((.........)))...)))..(((((((.........))))))).... (-18.17 = -19.43 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:40 2006