Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 620,681 – 620,801 |
Length | 120 |
Max. P | 0.962134 |
Location | 620,681 – 620,801 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -45.40 |
Consensus MFE | -38.60 |
Energy contribution | -40.44 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.02 |
Mean z-score | -1.84 |
Structure conservation index | 0.85 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 620681 120 + 22407834 GGGCGUCGCCAGGUGGCCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAAUACCUCGAACCCAACUUCUGGAAUUCCGGAUGUGG (((((..(((....))))))))......(((((..(((((..((((..(((....))))))))))))))))).((((.(((....))).))))..(((...(((((....)))))..))) ( -48.30) >DroSec_CAF1 9959 120 + 1 GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAGUACCUCGAGCCCAACUUCUGGAAUUCCGGAUGGGG (((((((((...)))).)))))......(((((..(((((..((((..(((....)))))))))))))))))(((((.(((....))).)))))((((...(((((....))))))))). ( -48.80) >DroSim_CAF1 9156 120 + 1 GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAGUACCUCGAGCCCAACUUCUGGAAUUCCGGAUGGGG (((((((((...)))).)))))......(((((..(((((..((((..(((....)))))))))))))))))(((((.(((....))).)))))((((...(((((....))))))))). ( -48.80) >DroEre_CAF1 13473 120 + 1 GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUAUCCGCGGCAUCGAACCAAUUCUGCCUGACAUGCCUCUCGAUGUAAAAAUACCUCGAGCCCAACUUCUGGAAUUCCGGAGGGGG (((((((((...)))).))))).......(((((...((...((((..(((....))))))).)).))))).(((((.(((....))).)))))(((..(((((((....)))))))))) ( -42.70) >DroYak_CAF1 12445 120 + 1 GGGCGUCGCCAGGUGACCGCCCAUCCCACGACACUUUCCUGCGGCAUCGAACCAAUUCUGCCUGACAUGCCUCUCGAUGUAAAAAUACCUCGAGCCCAACUUCUGGAAUUCCGGAGGGGG (((((((((...)))).)))))..(((...............((((..(((....)))))))..........(((((.(((....))).))))).....(((((((....)))))))))) ( -38.40) >consensus GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAAUACCUCGAGCCCAACUUCUGGAAUUCCGGAUGGGG (((((((((...)))).))))).......((((..(((((..((((..(((....)))))))))))))))).(((((.(((....))).)))))(((....(((((....))))).))). (-38.60 = -40.44 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:54 2006