Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,780,866 – 5,780,961 |
Length | 95 |
Max. P | 0.729640 |
Location | 5,780,866 – 5,780,961 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -25.00 |
Energy contribution | -25.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.92 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5780866 95 + 22407834 GCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAUGCGGCUUCCAUUUGCUUAAAAAA (((((((.((((..(((((..((((((.(((.....)))....))))))..))))).)))).........))))))).................. ( -27.50) >DroSec_CAF1 17926 95 + 1 UCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAUGCGGCUUCCAUUUGCUUGAAAGU ......((.(((..(((((..((((((.(((.....)))....))))))..))))).(((((..........)))))........))).)).... ( -26.40) >DroSim_CAF1 18717 95 + 1 UCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAAGCGGCUUCCAUUUGCUUGAAAGU ......((.(((..(((((..((((((.(((.....)))....))))))..))))).((((((........))))))........))).)).... ( -27.60) >consensus UCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAUGCGGCUUCCAUUUGCUUGAAAGU ...(((........(((((..((((((.(((.....)))....))))))..))))).(((((..........))))).......)))........ (-25.00 = -25.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:39 2006