Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,779,151 – 5,779,243 |
Length | 92 |
Max. P | 0.616761 |
Location | 5,779,151 – 5,779,243 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 98.55 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -19.60 |
Energy contribution | -19.93 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.95 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5779151 92 + 22407834 CAAAUAUGAGAACCCACUCGCAUAGUUUAUAGCAAUAGAUCUUAGUGUGAAAUGCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA ..........((((((.(((((((((((((....))))).))..)))))).........(((((((........))))))).)))))).... ( -19.70) >DroSec_CAF1 16212 92 + 1 CAAAUAUGAGAACCCACUCGCAUAGUUUAUCGCAAUAGAUCUUAGUGUGAAAUUCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA ..........((((((...((.(((..(.(((((.(((...))).))))).)..)))))(((((((........))))))).)))))).... ( -21.10) >DroSim_CAF1 17006 92 + 1 CAAAUAUGAGAACCCACUCGCAUAGUUUAUCGCAAUAGAUCUUAGUGUGAAAUUCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA ..........((((((...((.(((..(.(((((.(((...))).))))).)..)))))(((((((........))))))).)))))).... ( -21.10) >consensus CAAAUAUGAGAACCCACUCGCAUAGUUUAUCGCAAUAGAUCUUAGUGUGAAAUUCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA ..........((((((...((.(((..(.(((((.(((...))).))))).)..)))))(((((((........))))))).)))))).... (-19.60 = -19.93 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:37 2006