Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,778,022 – 5,778,140 |
Length | 118 |
Max. P | 0.589726 |
Location | 5,778,022 – 5,778,140 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -35.33 |
Consensus MFE | -35.07 |
Energy contribution | -35.40 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.99 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5778022 118 + 22407834 AGUCGCGGAAAGUGUAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA ((((((((...((((..(.(.(((..((((((((..(((((....).))))..)).)))))).......(....).))).).)..))))..)))).)))).................. ( -34.00) >DroSec_CAF1 15125 118 + 1 AGUCGCGGAAAGUGGAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA ..(((((..(((((((((...(((..((((((((..(((((....).))))..)).)))))).......(....).))).(((((......)))))..))))))))).....))))). ( -36.00) >DroSim_CAF1 15889 118 + 1 AGUCGCGGAAAGUGGAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA ..(((((..(((((((((...(((..((((((((..(((((....).))))..)).)))))).......(....).))).(((((......)))))..))))))))).....))))). ( -36.00) >consensus AGUCGCGGAAAGUGGAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA ..(((((..(((((((((...(((..((((((((..(((((....).))))..)).)))))).......(....).))).(((((......)))))..))))))))).....))))). (-35.07 = -35.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:33 2006