Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,777,400 – 5,777,527 |
Length | 127 |
Max. P | 0.778811 |
Location | 5,777,400 – 5,777,495 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 71.71 |
Mean single sequence MFE | -20.62 |
Consensus MFE | -6.70 |
Energy contribution | -7.18 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.28 |
Mean z-score | -1.85 |
Structure conservation index | 0.32 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5777400 95 - 22407834 CCCAAGGGGA-GGCAACA----AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUUUUUUUAAAAAUUAAGCAAUUA-GCAACAUUUU--------------- ..(((((((.-(....).----...((((..((.((.......))))..))))))))))).......................((.....-))........--------------- ( -16.50) >DroSec_CAF1 14505 93 - 1 CACAAGGGGCGGGCAGCA----AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUU---UCGAAAAUUAAGCAAUUA-GCUACAUUUU--------------- ..(((((((((..(((((----(.....))))...(((.....))).))..))))))))).........---..........(((.....-))).......--------------- ( -21.50) >DroSim_CAF1 15272 93 - 1 CACAAGGGGCGGGCAGCA----AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUU---UCGAAAAUUAAGCAAUUA-GCUACAUUUU--------------- ..(((((((((..(((((----(.....))))...(((.....))).))..))))))))).........---..........(((.....-))).......--------------- ( -21.50) >DroEre_CAF1 14621 109 - 1 CCCAUGGGG--G-A-CUAUUUUGUUUAUUUUCAGGGAGGUGAACUUGCACAUGCCCUUUGAAAUACUUG---UAAUAAAUUAAACAUUUAUGCAACAUUAAAAAGUAUGUGUAGCA ...((((..--.-.-))))...(((((((((....)))))))))((((((((((..(((((.....(((---((.(((((.....))))))))))..)))))..)))))))))).. ( -25.30) >DroYak_CAF1 15044 87 - 1 CCCAAAGAG--GGAAGCA-----AAUAUUUGCAGGCAAAUGAACUUGCAAAUGCCCUCUAAAAUACAUU---UAAUACAUUAAACAUUUA-GCAACAA------------------ .....((((--((.....-----..((((((((((........))))))))))))))))..........---..................-.......------------------ ( -18.31) >consensus CCCAAGGGG__GGCAGCA____AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUU___UAAAAAAUUAAGCAAUUA_GCAACAUUUU_______________ ..(((((((..(....)........((((((((.((.......)))))))))))))))))........................................................ ( -6.70 = -7.18 + 0.48)
Location | 5,777,424 – 5,777,527 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -12.70 |
Energy contribution | -13.18 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.19 |
Mean z-score | -2.30 |
Structure conservation index | 0.49 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5777424 103 - 22407834 GAUUGAACAUCAAAUUCAGAUGUUUUCGCAUUCCCAAGGGGA-GGCAACA----AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUUUUUUUAA (...(((((((.......)))))))...).....(((((((.-(....).----...((((..((.((.......))))..)))))))))))................ ( -21.70) >DroSec_CAF1 14529 101 - 1 GAUUGAACAUCAAAUUCAGAUGUUUUCGCAUUCACAAGGGGCGGGCAGCA----AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUU---UCGA ((..(((((((.......)))))))))(((((((((((.........(((----(.....)))).((....))..)))))))))))...((((((....))---)))) ( -27.80) >DroSim_CAF1 15296 101 - 1 GAUUGAACAUCAAAUUCAGAUGUUUUCGCAUUCACAAGGGGCGGGCAGCA----AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUU---UCGA ((..(((((((.......)))))))))(((((((((((.........(((----(.....)))).((....))..)))))))))))...((((((....))---)))) ( -27.80) >DroEre_CAF1 14661 101 - 1 GAUUGAACAUCAAAUUCAGAUGUUUUCCCCUUCCCAUGGGG--G-A-CUAUUUUGUUUAUUUUCAGGGAGGUGAACUUGCACAUGCCCUUUGAAAUACUUG---UAAU ....(((((((.......)))))))((((((......))))--)-)-..........((((((.((((..(((......)))...))))..))))))....---.... ( -26.20) >DroYak_CAF1 15065 98 - 1 GAUUGAACAUCAAAUUCAGAUGUUUUCGCAUUCCCAAAGAG--GGAAGCA-----AAUAUUUGCAGGCAAAUGAACUUGCAAAUGCCCUCUAAAAUACAUU---UAAU ((..(((((((.......)))))))))((.(((((.....)--)))))).-----..((((((((((........))))))))))................---.... ( -25.40) >consensus GAUUGAACAUCAAAUUCAGAUGUUUUCGCAUUCCCAAGGGG__GGCAGCA____AAAUAUUUGCACAGAGAUGAACUUGUGAAUGCCCUUUGAAAUACUUU___UAAA (...(((((((.......)))))))...).....(((((((..(....)........((((((((.((.......)))))))))))))))))................ (-12.70 = -13.18 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:32 2006