Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 619,149 – 619,251 |
Length | 102 |
Max. P | 0.655980 |
Location | 619,149 – 619,251 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -19.26 |
Consensus MFE | -16.74 |
Energy contribution | -17.41 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.87 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 619149 102 + 22407834 UCCGCCAGCAACUGGCGACAG---CAAAUGGCAACCCACAACACCAACUGGCAACCGGCAAUAGCAACUGCAACCUGAAACAGCAAC---AACAUUUCAAUAUCGUGA ...((((....(((....)))---....))))....(((...........(((....((....))...)))....(((((.......---....))))).....))). ( -18.90) >DroSec_CAF1 8362 108 + 1 UCCGCCAGCAACUGGCGACAGCAGCAACUGGCAACCCACAACACCAACUUGCAACCAGCAAUAGCAACUGCAACCUGAAACAGCAACAACAACAUUUCAAUAUCGUGA ...((((((..(((....)))..))...))))....(((.........(((((....((....))...)))))..(((((..............))))).....))). ( -19.44) >DroSim_CAF1 7547 108 + 1 UCCGCCAGCAACUGGCGACAGCAGCAACUGGCAACCCACAACACCAACUUGCAACCAGCAAUAGCAACUGCAACCUGAAACAGCAACAACAACAUUUCAAUAUCGUGA ...((((((..(((....)))..))...))))....(((.........(((((....((....))...)))))..(((((..............))))).....))). ( -19.44) >consensus UCCGCCAGCAACUGGCGACAGCAGCAACUGGCAACCCACAACACCAACUUGCAACCAGCAAUAGCAACUGCAACCUGAAACAGCAACAACAACAUUUCAAUAUCGUGA ...(((((...(((....)))......)))))....(((.........(((((....((....))...)))))..(((((..............))))).....))). (-16.74 = -17.41 + 0.67)
Location | 619,149 – 619,251 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -30.73 |
Energy contribution | -31.73 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.89 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 619149 102 - 22407834 UCACGAUAUUGAAAUGUU---GUUGCUGUUUCAGGUUGCAGUUGCUAUUGCCGGUUGCCAGUUGGUGUUGUGGGUUGCCAUUUG---CUGUCGCCAGUUGCUGGCGGA ...((...(((((((((.---...)).)))))))...(((((....))))))).(((((((((((((..(..(((....)))..---)...)))))...)))))))). ( -29.00) >DroSec_CAF1 8362 108 - 1 UCACGAUAUUGAAAUGUUGUUGUUGCUGUUUCAGGUUGCAGUUGCUAUUGCUGGUUGCAAGUUGGUGUUGUGGGUUGCCAGUUGCUGCUGUCGCCAGUUGCUGGCGGA (((((((((..(.........((.(((((........))))).))..((((.....)))).)..))))))))).((((((((.(((((....).)))).)))))))). ( -37.40) >DroSim_CAF1 7547 108 - 1 UCACGAUAUUGAAAUGUUGUUGUUGCUGUUUCAGGUUGCAGUUGCUAUUGCUGGUUGCAAGUUGGUGUUGUGGGUUGCCAGUUGCUGCUGUCGCCAGUUGCUGGCGGA (((((((((..(.........((.(((((........))))).))..((((.....)))).)..))))))))).((((((((.(((((....).)))).)))))))). ( -37.40) >consensus UCACGAUAUUGAAAUGUUGUUGUUGCUGUUUCAGGUUGCAGUUGCUAUUGCUGGUUGCAAGUUGGUGUUGUGGGUUGCCAGUUGCUGCUGUCGCCAGUUGCUGGCGGA (((((((((..(.........((.(((((........))))).))..((((.....)))).)..))))))))).((((((((....((((....)))).)))))))). (-30.73 = -31.73 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:50 2006