Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,749,658 – 5,749,765 |
Length | 107 |
Max. P | 0.987298 |
Location | 5,749,658 – 5,749,765 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 83.55 |
Mean single sequence MFE | -34.74 |
Consensus MFE | -26.98 |
Energy contribution | -27.54 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.66 |
Structure conservation index | 0.78 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5749658 107 - 22407834 UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUCCUGGGAAACCAGAUUAUAUAUCUUUC ......(((((((((((......))))))).))))........((((((.......((((((((........))))))))..(((....)))))))))......... ( -34.10) >DroSec_CAF1 25646 107 - 1 UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUUCUGGGAAACCAGAUUGUAUAUAUUUC ...((((((((((((((......))))))).))))(((....(.(((.(((.....)))))).)...)))..))).(((.(((((....))))).)))......... ( -37.90) >DroSim_CAF1 21398 107 - 1 UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUUCUGUGAAACCAGAUUGUAUAUCUUUC ......(((((((((((......))))))).))))..((((((((..((((....(((((((((........)))))))))..)))).)))).)))).......... ( -36.10) >DroEre_CAF1 22375 94 - 1 CAGAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCGGUUUGUGG-CACUUGAAGUGCCAGUAGAGCAUAGCUCACAUUCGGGGAAACCAGCU------------ ..(((((((((((((((......))))))).))))...(.(((((((-(((.....)))))).)))).)...)))).......((....))....------------ ( -35.00) >DroYak_CAF1 22236 95 - 1 UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCGAUUUUCGGUCACUUGAAGUGCCACUAUAGGAUAGCUGGCAUUCUGGGAAACCAGCU------------ ......(((((((((((......))))))).)))).(((.....)))........(((((((((((...)))).)))))))((((....))))..------------ ( -30.60) >consensus UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUUCUGGGAAACCAGAUU_UAUAU_UUUC ......(((((((((((......))))))).)))).(((.....)))........(((((((((........)))))))))((((....)))).............. (-26.98 = -27.54 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:21 2006