Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,747,795 – 5,747,903 |
Length | 108 |
Max. P | 0.970918 |
Location | 5,747,795 – 5,747,903 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 72.98 |
Mean single sequence MFE | -20.74 |
Consensus MFE | -14.46 |
Energy contribution | -15.30 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.06 |
Mean z-score | -1.78 |
Structure conservation index | 0.70 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.970918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5747795 108 + 22407834 CA--UAAUAUAUAAACAAU-CCACUUCCACUUCCGCAAAUCUCUUUGCGGAAUGCAUUGGAUAGUGCAAAGGAAACUCGAAGGAUUUUGUUCAC-AA---AAUAAAAUUUGAUCU ..--...............-....((((..(((((((((....)))))))))(((((......)))))..))))..(((((..((((((....)-))---)))....)))))... ( -26.50) >DroSec_CAF1 23659 91 + 1 CA--UAAUAUACAAACUGUGCCUCUUCCACUUCCGCAAAUCUCU-CGCGGAAUGCAUUGAAUAGUGCAAAGGAAAACCGAAGGAUUUUGUUUAC--------------------- ..--........((((....((((((((..((((((........-.))))))(((((......)))))..))))....).))).....))))..--------------------- ( -19.70) >DroSim_CAF1 19402 93 + 1 CAUAUAAUAUACAAACCGUGCCACUUCCACUUCCGCAAAUCUCA-UGCGGAAUGCAUUGGAUAGUGCAAAGGAAACUCGAAGGAUUUUGUUUAC--------------------- .......((.(((((((.(((.(((((((((((((((.......-))))))).)...)))).)))))).((....))....))..))))).)).--------------------- ( -22.30) >DroEre_CAF1 20402 106 + 1 CA--UAAUAUACAAACCGAGCCACUCCCACUUCCGUCAAUCUUA-UGCGGAAUGCAUUGGAUAGUGCAAAGAUAACUUU------UUUGUUUCAAAAAUUAAUAAUAUUUGAUCC ..--.......((((((((((.........(((((.((......-))))))).)).))))...(.(((((((.....))------)))))..)..............)))).... ( -13.60) >DroYak_CAF1 20165 111 + 1 CA--UAAUAAACAAACCCUGCCACUUCCACUUCCGCAAAUCGUA-UGCGGAAUGCAUUGGAUUGUGCAAAGGCAACUAUUAGAAUUUUGUUCC-AAACUUAAUAAUAUUUGAUCC ..--.......((((...((((........(((((((.......-)))))))(((((......)))))..))))..(((((....((((...)-))).....))))))))).... ( -21.60) >consensus CA__UAAUAUACAAACCGUGCCACUUCCACUUCCGCAAAUCUCA_UGCGGAAUGCAUUGGAUAGUGCAAAGGAAACUCGAAGGAUUUUGUUUAC_AA___AAUAA_AUUUGAUC_ ........................((((..(((((((........)))))))(((((......)))))..))))......................................... (-14.46 = -15.30 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:20 2006