Locus 2127

Sequence ID 2L_DroMel_CAF1
Location 5,736,165 – 5,736,271
Length 106
Max. P 0.734201
window3438

overview

Window 8

Location 5,736,165 – 5,736,271
Length 106
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.60
Mean single sequence MFE -26.83
Consensus MFE -20.00
Energy contribution -19.45
Covariance contribution -0.55
Combinations/Pair 1.32
Mean z-score -1.33
Structure conservation index 0.75
SVM decision value 0.43
SVM RNA-class probability 0.734201
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5736165 106 - 22407834
UGGGACUUUCUCGUGGAGACGACGAGGAAUAGCAAAUUGGCUGUGAUUAUAACCACCCAUUACAUAGAGGAAGCCAAACAGGCAAAUUGUGUAAGUGU---ACAAUGGG
((((...((((((((....).)))))))(((((......)))))...........))))((((((((.....(((.....)))...))))))))....---........ ( -29.40)
>DroVir_CAF1 11545 104 - 1
UGGGAAUUUCUGGUGGAAACGACCAGAAAUAGUAAAUUGGCUGUGAUCAUCACCACACAUUAUAUCGAGGAGGCCAAACAGGCCAAUUGCGUGAGUUU---CA--UCUA
..(((((((((((((....).))))))))).(.(((((.((((((........))))..............((((.....))))......)).)))))---).--))). ( -29.00)
>DroWil_CAF1 2130 102 - 1
UGGGAUUUUCUUGUGGAAACUACCAGAAAUAGCAAACUGGCUGUGAUUAUUACCACACAUUAUAUUGAGGAAGCCAAGCAGGCUAAUUGUGUAAGUAA---AC-UU---
(((....((((.(((....).)).))))(((((......)))))........))).((.((((((......((((.....))))....))))))))..---..-..--- ( -19.60)
>DroMoj_CAF1 13127 105 - 1
UGGGACUUUCUGGUGGAAACGACUAGAAAUAGCAAAUUGGCUGUGAUUAUCACCACACAUUAUAUCGAAGAGGCCAAGCAGGCGAAUUACGUAAGUGG---AA-GUCCA
..(((((((((((((....).))))))....((...((((((.((((................))))....))))))....))...((((....))))---))-)))). ( -30.99)
>DroAna_CAF1 7299 108 - 1
UGGAACUUUCUUGUGGAGACCACAAGGAACAGUAAACUGGCUGUGAUCAUCACCACCCACUACAUAGAGGAGGCCAAGCAGGCCAACUGCGUAAGUUGAGGAC-UUGGA
(((....(((((((((...)))))))))(((((......)))))........)))((..((......))..))((((((....(((((.....)))))..).)-)))). ( -30.00)
>DroPer_CAF1 16622 97 - 1
UGGGAUUUUCUUGUGGAGACAACCAGAAAUAGCAAAUUGGCUGUGAUCAUAACCACACAUUACAUAGAAGAGGCCAAGCAGGCAAAUUGUGUAAG------------GA
(((....((((..((....))...))))(((((......)))))........)))....((((((((.....(((.....)))...)))))))).------------.. ( -22.00)
>consensus
UGGGACUUUCUUGUGGAAACGACCAGAAAUAGCAAAUUGGCUGUGAUCAUCACCACACAUUACAUAGAGGAGGCCAAGCAGGCAAAUUGCGUAAGUGG___AC__U_GA
(((....((((((((....).)))))))(((((......)))))........))).................(((.....))).......................... (-20.00 = -19.45 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:19 2006