Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,730,392 – 5,730,527 |
Length | 135 |
Max. P | 0.992114 |
Location | 5,730,392 – 5,730,497 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 90.31 |
Mean single sequence MFE | -27.52 |
Consensus MFE | -20.98 |
Energy contribution | -20.10 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.76 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5730392 105 + 22407834 CGCUUCUCGAGCGCUGCUUUUGUGCACAGUGAGCCAGGAAA---CUAUGCAAUCAGUCAAAAC-AAAAAUAG-CACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGUG-- (((...(((((.((((.((((((....(.(((((.((....---))..))..))).)....))-)))).)))-).)))))((((((..((((....)))).)))))))))-- ( -33.30) >DroSec_CAF1 6323 107 + 1 CGCUCCUCGAGCACUGCCUUUGUGCACAGUGAGCCAGGAAA---CUAUGCAAUCAGUCAAAACCAAAAAUACCCACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGGG-- .((((((.(.((((.......)))).))).)))).((....---)).........................((((((......(((..((((....)))).)))))))))-- ( -26.00) >DroSim_CAF1 2097 105 + 1 CGCUCCUCGAGCACUGCCUUUGUGCACAGUGAGCCAGGAAA---CUAUGCAAUCAGUCAAAAC-AAAAAUAC-CACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGUG-- (((...((((((((((..........))))).((.((....---))..)).............-........-..)))))((((((..((((....)))).)))))))))-- ( -24.70) >DroEre_CAF1 2968 107 + 1 CGCUUCUCGAGCACUGCUGUUGUGCACAGUGAGCCAGGAAA---CUAUACUAUCAGUCCAAAC-AAACAUAC-CACUCUAACUGAAUUGCUGCGCACAGUUUUCAGUGUGGC ..........((((((...((((((.(((..(...((....---))......(((((......-........-.......))))).)..))).))))))....))))))... ( -27.70) >DroYak_CAF1 2554 110 + 1 CGCUUCUCGAGCACUGCCUUUGUGCACAGUGAGCCAGGAAACAACUAUCCUAUCAGUCCAAAC-AAAAAUAC-CACUCUAACUGAAUUACUCCCCAGAGUUUUCAGUGUGGC .((((((.(.((((.......)))).))).)))).((((........))))............-.......(-(((....((((((..((((....)))).)))))))))). ( -25.90) >consensus CGCUUCUCGAGCACUGCCUUUGUGCACAGUGAGCCAGGAAA___CUAUGCAAUCAGUCAAAAC_AAAAAUAC_CACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGUG__ .((((((.(.((((.......)))).))).))))..............................................((((((..((((....)))).))))))..... (-20.98 = -20.10 + -0.88)
Location | 5,730,431 – 5,730,527 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 74.84 |
Mean single sequence MFE | -18.02 |
Consensus MFE | -10.10 |
Energy contribution | -9.62 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.20 |
Mean z-score | -2.39 |
Structure conservation index | 0.56 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5730431 96 + 22407834 AA---CUAUGCAAUCAGUCAAAAC-AAAAAUAG-CACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGUG----UAUA-AUUGCAGGGUAUUCACGCAU-------AAAAAC ..---.(((((.....((....))-........-.((((..((((((..((((....)))).)))))).((----((..-..))))))))......))))-------)..... ( -19.20) >DroSec_CAF1 6362 98 + 1 AA---CUAUGCAAUCAGUCAAAACCAAAAAUACCCACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGGG----UACA-AUUGCACGGUAUUCACGCAU-------AAAAAC .(---(..((((((..((....))......((((((((......(((..((((....)))).)))))))))----))..-))))))..))..........-------...... ( -20.90) >DroSim_CAF1 2136 97 + 1 AA---CUAUGCAAUCAGUCAAAAC-AAAAAUAC-CACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGUG----UACAAAUUCCAGAGUAUUCACGCAU-------AAAAAC ..---.(((((.....((....))-........-.((((..((((((..((((....)))).))))))(..----..)........))))......))))-------)..... ( -16.50) >DroEre_CAF1 3007 92 + 1 AA---CUAUACUAUCAGUCCAAAC-AAACAUAC-CACUCUAACUGAAUUGCUGCGCACAGUUUUCAGUGUGGCUAUC----------------CACACACCAUUUAAGAAAGU ..---....(((.((.........-........-.........((((..((((....)))).))))((((((....)----------------))))).........)).))) ( -16.00) >DroYak_CAF1 2593 110 + 1 AACAACUAUCCUAUCAGUCCAAAC-AAAAAUAC-CACUCUAACUGAAUUACUCCCCAGAGUUUUCAGUGUGGCUCUACU-AUUGUACGGAACUUACUCACCAUUGAAAAAAGU .............(((((......-.......(-(((....((((((..((((....)))).))))))))))((.(((.-...))).))............)))))....... ( -17.50) >consensus AA___CUAUGCAAUCAGUCAAAAC_AAAAAUAC_CACUCGAACUGAAUUACUCCCCAGAGUUUUCAGUGUG____UACA_AUUGCACGGUAUUCACGCAU_______AAAAAC .........................................((((((..((((....)))).))))))............................................. (-10.10 = -9.62 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:13 2006