Locus 2122

Sequence ID 2L_DroMel_CAF1
Location 5,724,859 – 5,724,965
Length 106
Max. P 0.797533
window3424

overview

Window 4

Location 5,724,859 – 5,724,965
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.72
Mean single sequence MFE -35.10
Consensus MFE -32.53
Energy contribution -32.40
Covariance contribution -0.13
Combinations/Pair 1.08
Mean z-score -1.54
Structure conservation index 0.93
SVM decision value 0.61
SVM RNA-class probability 0.797533
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5724859 106 - 22407834
ACGC--------------ACACACGCACUCACGACUGCAUUGGCGAAUAGUGUGGGCGAAGUGCAACGAAAGAGCGGGAGAAGCGAAACGAAAGACACGCGGUUUCAAUUUGCUAACAGU
.(((--------------......(((((..((.(..(((((.....)))))..).)).)))))..(....).)))((((..(((...(....)...)))..)))).............. ( -30.50)
>DroSim_CAF1 3683 106 - 1
ACGC--------------ACACACGCACUCACGACUGCAUUGGCGAAUAGUGUGGGCGGAGUGCAACGAAAGAGCGGGAGAAGCGAAACGAAAGACACGCGGUUUCAAUUUGCUAGCAGU
.(((--------------......((((((.((.(..(((((.....)))))..).))))))))..(....).)))((((..(((...(....)...)))..)))).............. ( -35.30)
>DroEre_CAF1 3365 112 - 1
ACGCACG--------CACACACACGCGCUCACGACUGCAUUGGCGAAUAGUGUGGGCGGAGUGCAACGAAAGAGCGGGAGAAGCGAAACGAAAGACACGCGGUUUCAAUUUGUUAGCAGU
..((.((--------(........((((((.((.(..(((((.....)))))..).))))))))..(....).)))((((..(((...(....)...)))..)))).........))... ( -37.60)
>DroYak_CAF1 3380 120 - 1
ACGCACGGGCUGCAACACACACACGCACUCACGACUGCAUUGGCGAAUAGUGUGGGCGGAGUGCAACGAAAGAGCGGGAGAAGCGAAACGAAAGACACGCGGUUUUAAUUUGUUAGCAGU
........(((((((((.......((((((.((.(..(((((.....)))))..).))))))))..(....)....((((..(((...(....)...)))..))))....)))).))))) ( -37.00)
>consensus
ACGC______________ACACACGCACUCACGACUGCAUUGGCGAAUAGUGUGGGCGGAGUGCAACGAAAGAGCGGGAGAAGCGAAACGAAAGACACGCGGUUUCAAUUUGCUAGCAGU
.(((....................((((((.((.(..(((((.....)))))..).))))))))..(....).)))((((..(((...(....)...)))..)))).............. (-32.53 = -32.40 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:06 2006