Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,719,835 – 5,719,944 |
Length | 109 |
Max. P | 0.861724 |
Location | 5,719,835 – 5,719,944 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -36.97 |
Consensus MFE | -22.86 |
Energy contribution | -24.03 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.32 |
Mean z-score | -2.00 |
Structure conservation index | 0.62 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5719835 109 - 22407834 UGCAAU---AGGAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGUUCAAUGUGGCACUCCUGCUGGUUUGGAGGAACCUGCAGCAGGCCCAGAAACUGGCCGCAUCUUCUA ......---.(((......)))...((((((((((..((..((........))(((.((.((((.(((((....))))).)))).)))))..)).))))))))))....... ( -39.30) >DroSec_CAF1 11544 106 - 1 UGCAAU---ACGAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGCUCAGUGUGGCACUCCUGCUGGUUUGGAGGAACCUGCAGCAGGCUCAGAAACUGG---CAUCUUCCA ......---..(((..(((((..((((.(((((((((.((((((....))))))))))).((((.(((((....))))).))))..))))))))....))---))).))).. ( -39.60) >DroSim_CAF1 13800 109 - 1 UGCAAU---AGGAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGCUCAGUGUGGCACUUUUGCUGGUUUGGAGGAACCUGCAGCAGGCUCAGAAACUGGCCGCAUCUUCUA ......---.(((......)))...((((((((((((.((((((....)))))))).((.((((.(((((....))))).)))).))........))))))))))....... ( -40.30) >DroEre_CAF1 12984 109 - 1 UGCAAU---AGAAGAUAUGUCCGUCUGUGGACAGUGCUCAUACUGCUCAGUGUGGCACUUCUGCUGGUUUGGAGGAACUUGCAGCAGGCUCGGAAACUUGCCGCAACUUCAA ......---.((((...((((((....))))))((((.((((((....))))))))))..((((.(((((....))))).))))..(((..(....)..)))....)))).. ( -39.40) >DroYak_CAF1 11511 109 - 1 UGCAAU---AGAAGAUACAUCCGUCUGUGGCCAGUGCUCAUACUUCUCAGUGUGGCACUGCUGCUGGUUUGGAGGAACUUUCAGCAGGCUCAGAAACUUGCCGCAUCUUCAA ......---.((((((.((....((((.(((((((((.((((((....)))))))))))((((..(((((....)))))..)))).))))))))....))....)))))).. ( -39.90) >DroAna_CAF1 11104 107 - 1 UGUAACUCCAAAGGAUUCCUCCGCCUGUUUCCAAUCGUUCUGCUCUUCAAUACCGCUUUGGUGCUCGUGUGGAGGAAUGUUCAGCAGGCCCAACAGCUCACCCAAAC----- (((.........(((....)))(((((((......(((((..((((.((.((((.....))))....)).)))))))))...)))))))...)))............----- ( -23.30) >consensus UGCAAU___AGAAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGCUCAGUGUGGCACUCCUGCUGGUUUGGAGGAACCUGCAGCAGGCUCAGAAACUGGCCGCAUCUUCAA .......................((((.(((((((((.((((((....))))))))))).((((.(((((....))))).))))..)))))))).................. (-22.86 = -24.03 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:05 2006