Locus 2120

Sequence ID 2L_DroMel_CAF1
Location 5,710,565 – 5,710,655
Length 90
Max. P 0.700288
window3422

overview

Window 2

Location 5,710,565 – 5,710,655
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 93.70
Mean single sequence MFE -15.65
Consensus MFE -14.23
Energy contribution -14.59
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.20
Structure conservation index 0.91
SVM decision value 0.35
SVM RNA-class probability 0.700288
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5710565 90 - 22407834
CUUUGUUGUUU-UUUCUAGCGACUACCGGAAGACAUUCAAGGUGUGCUUCUUUCCCAGCUUUCCCAGCUCCUUUCCCACUACACAUUUUGA
....((((((.-.....))))))...(....)....((((((((((..........((((.....))))............)))))))))) ( -16.65)
>DroSec_CAF1 2100 88 - 1
CUUUGUUGUUU-UUUCUAGCGACUACCGGAAGACAUUCAAGGUGUUCUUCUUUCCCAGCUUUCCCAGCUCCUUUCC--CUACACAUUUUGA
....((((((.-.....))))))...(....)....(((((((((...........((((.....)))).......--....))))))))) ( -14.85)
>DroSim_CAF1 2079 88 - 1
CUUUGUUGUUU-UUUCUAGCGACUACCGGAAGACAUUCAAGGUGUGCUUCUUUCCCAGCUUUCCCAGCUCCUUUCC--CUACACAAUUUGA
....((((((.-.....))))))...(....)....(((((.((((..........((((.....)))).......--...)))).))))) ( -14.15)
>DroEre_CAF1 3897 85 - 1
CUUUGUUGUUU-UUUCUAGCGACUACCGGAAGACAUUCAAGGUGUGCUUCUCU---GGCUUUCCCAGCUCCUUUCC--CUGCUCAUUUUGA
....((((((.-.....))))))...(....)....((((((((.((......---((((.....)))).......--..)).)))))))) ( -16.66)
>DroYak_CAF1 2188 86 - 1
CUUUGUUGUUUUUUUCUAGCGACUACCGGAAGACAUUCAAGGUGUGCUUCUUU---GGCUUUCCCAGCUCCUUUCC--CUACACAUUUUGA
....((((((.......))))))...(....)....((((((((((.......---((((.....)))).......--...)))))))))) ( -15.93)
>consensus
CUUUGUUGUUU_UUUCUAGCGACUACCGGAAGACAUUCAAGGUGUGCUUCUUUCCCAGCUUUCCCAGCUCCUUUCC__CUACACAUUUUGA
....((((((.......))))))...(....)....((((((((((..........((((.....))))............)))))))))) (-14.23 = -14.59 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:04 2006