Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 617,129 – 617,219 |
Length | 90 |
Max. P | 0.989353 |
Location | 617,129 – 617,219 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -25.52 |
Energy contribution | -25.56 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.96 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 617129 90 + 22407834 GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGCGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA ((.(((((((.((((((..(((.....)))...)))))).)))))))))............((((((......))))))........... ( -28.70) >DroSec_CAF1 6391 90 + 1 GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA ((.((..(((.((((((..(((.....)))...)))))).)))..))))............((((((......))))))........... ( -26.20) >DroSim_CAF1 5560 90 + 1 GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA ((.((..(((.((((((..(((.....)))...)))))).)))..))))............((((((......))))))........... ( -26.20) >DroEre_CAF1 9772 90 + 1 GCUGCUGCAGUUGCAACUUGCAACCGCUAUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA (..(((((.((..(((..((((((.........)))))).)))..)))))))..)......((((((......))))))........... ( -25.60) >DroYak_CAF1 8742 89 + 1 GCUGCUGCAGUUGCAAC-UGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA (..(((((.((..(((.-((((((.........)))))).)))..)))))))..)......((((((......))))))........... ( -26.70) >consensus GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA ((.(((((((.((((((..(((.....)))...)))))).)))))))))............((((((......))))))........... (-25.52 = -25.56 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:47 2006