Locus 2119

Sequence ID 2L_DroMel_CAF1
Location 5,707,353 – 5,707,454
Length 101
Max. P 0.971448
window3421

overview

Window 1

Location 5,707,353 – 5,707,454
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.80
Mean single sequence MFE -28.32
Consensus MFE -10.36
Energy contribution -11.52
Covariance contribution 1.16
Combinations/Pair 1.10
Mean z-score -2.31
Structure conservation index 0.37
SVM decision value 1.68
SVM RNA-class probability 0.971448
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5707353 101 - 22407834
UCUGUUCCUUUC----------GAGCAAAA-CGCAAGUGUCGUUGACAUUUGCCGAAAAUAGGGUUUUCGUCUGCUUGGAUCAAAAGCAUUAAAAACCGCUACAUCAUCCGU--------
..(((((.....----------)))))...-.(((((((((...))))))))).((...(((((((((....(((((.......)))))...)))))).)))..))......-------- ( -25.50)
>DroSec_CAF1 152626 102 - 1
UAUAUUCCUUCC----------AAGCAGAAGCACAAGUGUCGUUGACAUUUGCCGAAAAUAGGGUUUUCGUCUGCUUGGAUCAAAAGCAUUAAAAACCGCUACAUCAUCCGC--------
.........(((----------(((((((....((((((((...)))))))).(((((((...))))))))))))))))).....(((..........)))...........-------- ( -28.50)
>DroSim_CAF1 152185 102 - 1
UCUGUUCCUUCC----------AAGCAGAAUCGCAAGUGUCGUUGACAUUUGCCGAAAAUAGGGUUUUCGUCUGCUUGGAUCAAAAGCAUUAAAAACCGCUACAUCAUCCGC--------
..((((...(((----------(((((((...(((((((((...)))))))))(((((((...))))))))))))))))).....)))).......................-------- ( -32.20)
>DroYak_CAF1 154419 101 - 1
CCUGUUCCUUUC----------AAACAGAAGCGCAAGUGUCGUUGACAUUUGCCA-AAAGAAGGUUUUCGUCUACAAGGAUCAAAAGCAUUAAAAACCGCUACAUCAUGCGC--------
.(((((......----------.))))).((((((((((((...)))))))))..-......(.((((.((((....)))).)))).)..........)))...........-------- ( -21.60)
>DroAna_CAF1 148177 111 - 1
UAUUUUGCUUUGGAAAGCGCCAAAGCGAAAGCGCAAAUGGCGUUGACAGGUCUC---------CUCUCCGUCUUUUCGGAGCAGAAGCAUUAAAAACCGCUAAAUCAUAAGCUGCCACUU
..((((((((((((((((((((..((....)).....)))))))(((.((....---------....))))).)))))))))))))............(((........)))........ ( -33.80)
>consensus
UCUGUUCCUUUC__________AAGCAGAAGCGCAAGUGUCGUUGACAUUUGCCGAAAAUAGGGUUUUCGUCUGCUUGGAUCAAAAGCAUUAAAAACCGCUACAUCAUCCGC________
.......................(((......(((((((((...)))))))))..........(((((.((((....))).).)))))..........)))................... (-10.36 = -11.52 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:03 2006