Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,703,256 – 5,703,382 |
Length | 126 |
Max. P | 0.741117 |
Location | 5,703,256 – 5,703,350 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 88.59 |
Mean single sequence MFE | -23.00 |
Consensus MFE | -16.26 |
Energy contribution | -17.90 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.04 |
Mean z-score | -2.16 |
Structure conservation index | 0.71 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5703256 94 - 22407834 CCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUGAAAAAUCAG------AUUUUUCCAACGGGUACACACUUGUCCGAAGCUC ....(((......(((((((((.(((((....)))))..)))))))))((((....))))------..........(((..(......)..))).))).. ( -25.10) >DroSec_CAF1 148521 94 - 1 CCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUGAAAAAUCUG------AUUUUUCCAACGGGUACACACUGGUCCGAAGCUC ....(((...((.(((((((((.(((((....)))))..))))))))).)).........------.....((..((.(((....))).))..))))).. ( -23.30) >DroSim_CAF1 148143 94 - 1 CCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUAAAAAAUCUG------AUUUUUCCAACGGGUACACACUGGUCCGAAGCUC ....(((.((((.(((((((((.(((((....)))))..))))))))).......(((((------..........)))))......))))....))).. ( -22.30) >DroEre_CAF1 151457 100 - 1 UCCCGCUAACCACUUUCUGACUUCUUGGCCAGUAAAGUCAGUCGGAAACUGAAAAAUCUUUGAAACAUUUUUGCAACGGGUACACACUUGUGCAAAGCUC ....(((...((.(((((((((.(((........)))..))))))))).))...................(((((.(((((....))))))))))))).. ( -23.70) >DroYak_CAF1 150123 94 - 1 CCCCGCUAACCAUUUUCUGACUUCCUAGCAAGUGAAGUCAGCCAGAAAGUGAAAAAUCUG------AUUUUUCCAACGGGUACACACUUAUUCGAAGCUU ....(((...((((((((((((((((....)).))))))....)))))))).........------..........((((((......)))))).))).. ( -20.60) >consensus CCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUGAAAAAUCUG______AUUUUUCCAACGGGUACACACUUGUCCGAAGCUC ....(((...((.(((((((((.(((((....)))))..))))))))).))....................((..((((((....))))))..))))).. (-16.26 = -17.90 + 1.64)
Location | 5,703,290 – 5,703,382 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.63 |
Mean single sequence MFE | -20.26 |
Consensus MFE | -14.89 |
Energy contribution | -15.73 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.05 |
Mean z-score | -1.71 |
Structure conservation index | 0.73 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5703290 92 - 22407834 UAUUCUAUAUAUUGGUGUUUUUACUUCAGCAGCCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUGAAAAAUCAG ............((((((....))...(((......))).)))).(((((((((.(((((....)))))..)))))))))((((....)))) ( -21.60) >DroSec_CAF1 148555 92 - 1 UAUUCUAUAUAUUGGUGUUUUUACUUCAGGAGCCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUGAAAAAUCUG ...........(((((((.....(....).....))))))).((.(((((((((.(((((....)))))..))))))))).))......... ( -21.50) >DroSim_CAF1 148177 92 - 1 UAUUCUAUAUAUUGGUGUUUUUACUUCAGGAGCCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUAAAAAAUCUG ...........(((((((.....(....).....)))))))....(((((((((.(((((....)))))..)))))))))............ ( -19.80) >DroEre_CAF1 151497 92 - 1 UAUCCUAUACAUUGGUGUUUUUACUUCACGAGUCCCGCUAACCACUUUCUGACUUCUUGGCCAGUAAAGUCAGUCGGAAACUGAAAAAUCUU ...........((((((.....((((...))))..)))))).((.(((((((((.(((........)))..))))))))).))......... ( -15.70) >DroYak_CAF1 150157 92 - 1 UAUUCUAUAUAUUGGUGUUUUCACUUCAGGAGCCCCGCUAACCAUUUUCUGACUUCCUAGCAAGUGAAGUCAGCCAGAAAGUGAAAAAUCUG .............(((.((((((((((.(((((...))).........((((((((((....)).)))))))))).).)))))))))))).. ( -22.70) >consensus UAUUCUAUAUAUUGGUGUUUUUACUUCAGGAGCCACGCUAACCACUUUCUGACUUCUUCGCAAGUGAAGUCAGUCAGAAACUGAAAAAUCUG ...........((((((..................)))))).((.(((((((((.(((((....)))))..))))))))).))......... (-14.89 = -15.73 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:02 2006