Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,702,098 – 5,702,258 |
Length | 160 |
Max. P | 0.851777 |
Location | 5,702,098 – 5,702,218 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -30.59 |
Consensus MFE | -28.66 |
Energy contribution | -29.30 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 0.94 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5702098 120 + 22407834 UUUUGGCAAGUUUAACAUGGUUUGGGGCACAUAAACCAAAACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCAACGAUGACGGGUCGUCCU .((((((..((((....((((((((....).))))))))))).(((((.......)))))..((((((.......)))))).......))))))..........(((((....))))).. ( -30.70) >DroSec_CAF1 147432 120 + 1 UUUUGGCAAGUUUAACAUAGUUUGAGGCACAUAAACCAAAACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCU ...(((((.......((.....)).(((...............(((((.......)))))..((((((.......)))))).......)))...)))))..((((((.....)))))).. ( -30.40) >DroSim_CAF1 147000 120 + 1 UUUUGGCAAGUUUAACAUGGUUUGGGGCACAUAAACCAAAACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCU .((((((..((((....((((((((....).))))))))))).(((((.......)))))..((((((.......)))))).......)))))).......((((((.....)))))).. ( -32.70) >DroEre_CAF1 150240 120 + 1 UUUUGGCAAGUUUAACAUGGUUUGGGGCACAUAAACCAAAACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAAGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCU .((((((..((((....((((((((....).))))))))))).(((((.......)))))..(((.((.......)).))).......)))))).......((((((.....)))))).. ( -28.40) >DroYak_CAF1 149203 120 + 1 UUUUGGCAAGUUUAACAUGGUUUGGGGCACAUAAACCAAAACGUCAUAACAAGCAUGUGAGAGCCAUCUAUGCACGAAGGCAAUUAAAGCCAAAAGCCAUCGACGAUGACGGUUUGUCCU ....((((((.......((((((((....).)))))))...((((((.....(((((.((......))))))).(((.(((..............))).)))...)))))).)))))).. ( -30.74) >consensus UUUUGGCAAGUUUAACAUGGUUUGGGGCACAUAAACCAAAACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCU .((((((...(((.((((.(((((.(((..............)))....))))))))).)))((((((.......)))))).......)))))).......((((((.....)))))).. (-28.66 = -29.30 + 0.64)
Location | 5,702,138 – 5,702,258 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -34.11 |
Consensus MFE | -28.04 |
Energy contribution | -29.28 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.11 |
Mean z-score | -1.28 |
Structure conservation index | 0.82 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5702138 120 + 22407834 ACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCAACGAUGACGGGUCGUCCUUAUGGGUCCGAGAUCCAUCCAUCUCACAGUGGAAUUUGGA .((((((........(((((((....))).)))).(((((((.((......)).)))))))....)))))).....(((...((((((...))))))(((((......)))))....))) ( -33.60) >DroSec_CAF1 147472 120 + 1 ACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCUUAUGGGCCCGAGAUCCAUCCAUCGCACAGUGAACUGUGGC ..(((((........(((((((....))).))))((((((((.((......)).))))))))...)))))(((((((((....))))....)))))........(((((....))))).. ( -39.90) >DroSim_CAF1 147040 120 + 1 ACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCUUAUGGGCCCGAGAUCCAUUCAUCGCACAGUGAACUUUGGU ...(((((.......)))))..((((......((((((((((.((......)).)))))))(.((((((.(((((((((....))))....)))))..)))))))...))).....)))) ( -36.20) >DroEre_CAF1 150280 120 + 1 ACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAAGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCUUAUGGGCCUGAUAUCCAUUCACCGCACAGUGGUCCUUAGC .((((((........(((((((....))).))))(((.((((.((......)).)))).)))...))))))....((((....))))((((...(((((........)))))...)))). ( -29.10) >DroYak_CAF1 149243 120 + 1 ACGUCAUAACAAGCAUGUGAGAGCCAUCUAUGCACGAAGGCAAUUAAAGCCAAAAGCCAUCGACGAUGACGGUUUGUCCUUAUGGGCCUGAUAUCCAUCCACCGCACAGUGGUCUUCAGC .((((((.....(((((.((......))))))).(((.(((..............))).)))...))))))....((((....))))((((.......((((......))))...)))). ( -31.74) >consensus ACGUCAUAACAAGCAUGUGAGAGCCAUCUAUACACGAUGGCAAUUAAAGCCAAAUGCCAUCGACGAUGACGGGUCGUCCUUAUGGGCCCGAGAUCCAUCCAUCGCACAGUGGACUUUGGC .((((((........(((((((....))).))))((((((((.((......)).))))))))...))))))....((((....))))(((((.(((((..........))))).))))). (-28.04 = -29.28 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:00 2006