Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,700,843 – 5,700,935 |
Length | 92 |
Max. P | 0.924498 |
Location | 5,700,843 – 5,700,935 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -20.59 |
Consensus MFE | -17.69 |
Energy contribution | -17.50 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.20 |
Mean z-score | -1.50 |
Structure conservation index | 0.86 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5700843 92 + 22407834 CCGUUUCCUUGUUCUGGUUUUUAUGCCACUUUAACGUUUCCUAAUGUACGUGGCGCAUUACGCGGCCACAAAAAUAACAAUAAGCCGGAAAC ...........(((((((((...((........(((((....)))))..(((((((.....)).)))))........))..))))))))).. ( -22.50) >DroSec_CAF1 146174 92 + 1 CCGUUUCCUUGUUCUGGUUUUUAUGCCACUUUAACGUUUCCUAAUGUACGUGGCACAUUACGCGGCCACAAAAAUAACAAUAAGCCGGAAAC ..((((((...............((((((....(((((....)))))..))))))........(((.................))))))))) ( -20.33) >DroSim_CAF1 145678 92 + 1 CCGUUUCCUUGUUCUGGUUUUUAUGCCACUUUAACGUUUCCUAAUGUACGUGGCACAUUACGCGGCCACAAAAAUAACAAUAAGCCGGAAAC ..((((((...............((((((....(((((....)))))..))))))........(((.................))))))))) ( -20.33) >DroEre_CAF1 148993 92 + 1 CCGUUUCCUUGUUCUGGGUUUUAUGCCACUUUAACGUUUCCUAAUGUACGUGGCACAUUACGCGGCCACAAAAAUAACAAUAAGCCGGAAAC ..((((((.......(.((..(.((((((....(((((....)))))..)))))).)..)).)(((.................))))))))) ( -23.13) >DroYak_CAF1 147966 92 + 1 CCGUUUCCUUGUUCUGGUUUUUAUGCCACUUUAACGUUUCCUAAUGUACGUGGCACAUUACGCGGCCACAAAAAUAACAAUAAGCCGGAAAC ..((((((...............((((((....(((((....)))))..))))))........(((.................))))))))) ( -20.33) >DroAna_CAF1 141957 91 + 1 CUGUUUCCUUGCUGCGGUUUUUAUAUCAUUUUAACAUUUCCUAAUGUAUGUGGCACAUUACGCGGCCACAA-AAUAACAAUAUGAAGGAGCC .............((..(((((((((.......(((((....))))).((((((.(.......))))))).-.......))))))))).)). ( -16.90) >consensus CCGUUUCCUUGUUCUGGUUUUUAUGCCACUUUAACGUUUCCUAAUGUACGUGGCACAUUACGCGGCCACAAAAAUAACAAUAAGCCGGAAAC ..((((((.......(((......)))......(((((....)))))..(((((.(.......)))))).................)))))) (-17.69 = -17.50 + -0.19)
Location | 5,700,843 – 5,700,935 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -26.24 |
Consensus MFE | -22.42 |
Energy contribution | -23.33 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.09 |
Mean z-score | -2.14 |
Structure conservation index | 0.85 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5700843 92 - 22407834 GUUUCCGGCUUAUUGUUAUUUUUGUGGCCGCGUAAUGCGCCACGUACAUUAGGAAACGUUAAAGUGGCAUAAAAACCAGAACAAGGAAACGG ((((((......(((((.((((((((.((((.(((((..(...)..)))))(....)......))))))))))))....))))))))))).. ( -25.00) >DroSec_CAF1 146174 92 - 1 GUUUCCGGCUUAUUGUUAUUUUUGUGGCCGCGUAAUGUGCCACGUACAUUAGGAAACGUUAAAGUGGCAUAAAAACCAGAACAAGGAAACGG ((((((......(((((.((((((((.((((.((((((((...))))))))(....)......))))))))))))....))))))))))).. ( -28.80) >DroSim_CAF1 145678 92 - 1 GUUUCCGGCUUAUUGUUAUUUUUGUGGCCGCGUAAUGUGCCACGUACAUUAGGAAACGUUAAAGUGGCAUAAAAACCAGAACAAGGAAACGG ((((((......(((((.((((((((.((((.((((((((...))))))))(....)......))))))))))))....))))))))))).. ( -28.80) >DroEre_CAF1 148993 92 - 1 GUUUCCGGCUUAUUGUUAUUUUUGUGGCCGCGUAAUGUGCCACGUACAUUAGGAAACGUUAAAGUGGCAUAAAACCCAGAACAAGGAAACGG ((((((((((...............))))(.((..((((((((........(....)......))))))))..)).).......)))))).. ( -27.90) >DroYak_CAF1 147966 92 - 1 GUUUCCGGCUUAUUGUUAUUUUUGUGGCCGCGUAAUGUGCCACGUACAUUAGGAAACGUUAAAGUGGCAUAAAAACCAGAACAAGGAAACGG ((((((......(((((.((((((((.((((.((((((((...))))))))(....)......))))))))))))....))))))))))).. ( -28.80) >DroAna_CAF1 141957 91 - 1 GGCUCCUUCAUAUUGUUAUU-UUGUGGCCGCGUAAUGUGCCACAUACAUUAGGAAAUGUUAAAAUGAUAUAAAAACCGCAGCAAGGAAACAG .(((.........(((((((-(((((((.((.....)))))))..(((((....))))).)))))))))..........)))..(....).. ( -18.11) >consensus GUUUCCGGCUUAUUGUUAUUUUUGUGGCCGCGUAAUGUGCCACGUACAUUAGGAAACGUUAAAGUGGCAUAAAAACCAGAACAAGGAAACGG ((((((......(((((.((((((((.((((.((((((((...))))))))(....)......))))))))))))....))))))))))).. (-22.42 = -23.33 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:58 2006