Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,699,639 – 5,699,739 |
Length | 100 |
Max. P | 0.608679 |
Location | 5,699,639 – 5,699,739 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -18.39 |
Energy contribution | -19.45 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.24 |
Mean z-score | -1.62 |
Structure conservation index | 0.61 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5699639 100 + 22407834 AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCGACCCGGCGUAUGCGCAAUG--CAUUGGUCAUAUAUUAAGUAUUCGCUGUGGC--- ..........((((((......))))))(((((....((((((---(.(......).)))))))(((.((((--(.(((((.....)))))))))))))))))).--- ( -32.60) >DroGri_CAF1 188366 89 + 1 AAAUUGCACUUUG------UCUG---UGGCACAAAUAGUUUGCAGUCAGCUC------GCGUAUGUGCAAUG--UGC--AGCAUUUAUUAAGUAUACGCCAUGUGUUU .....((((.(((------.(((---..(.((.....)))..))).)))...------((((((((((....--...--.)))).........))))))...)))).. ( -19.00) >DroSec_CAF1 144996 100 + 1 AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCGCCACGGCGUAUGCGCAAUG--CAUUGGCCAUAUAUUAAGUAUUCGCUGUGGC--- ...((((...((((((......))))))..)))).........---......(((((((((.((((..((((--.((.....)).))))..)))).)))))))))--- ( -33.20) >DroSim_CAF1 144492 100 + 1 AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCGCCACGGCGUAUGCGCAAUG--CAUUGGCCAUAUAUUAAGUAUUCGCUGUGGC--- ...((((...((((((......))))))..)))).........---......(((((((((.((((..((((--.((.....)).))))..)))).)))))))))--- ( -33.20) >DroEre_CAF1 147799 100 + 1 AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCAACGCGGCGUAUGCGCAAUG--CAUUGGUCAUAUAUUAAGUAUUCGCCGCGUG--- ...((((...((((((......))))))..)))).........---.......((((((((.((((..((((--.((.....)).))))..)))).)))))))).--- ( -32.60) >DroYak_CAF1 146796 102 + 1 AAAUUGCACUUACGGCUAAGCUGCCGUACCACAAAUUGUGAGC---CUGUCCACCGUGGCGUAUGCGCAAUGCGCAUUGGUCAUAUAUUACGUAUACGCUGUGUC--- .....((...((((((......)))))).(((.....))).))---........((..(((((((((.((((.((....))....)))).)))))))))..))..--- ( -30.00) >consensus AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC___CUGUCCGCCACGGCGUAUGCGCAAUG__CAUUGGUCAUAUAUUAAGUAUUCGCUGUGGC___ ...((((...((((((......))))))..))))....................(((((((.((((..((((.............))))..)))).)))))))..... (-18.39 = -19.45 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:57 2006