Locus 2114

Sequence ID 2L_DroMel_CAF1
Location 5,699,352 – 5,699,449
Length 97
Max. P 0.989962
window3413

overview

Window 3

Location 5,699,352 – 5,699,449
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -23.26
Consensus MFE -20.05
Energy contribution -20.17
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -2.05
Structure conservation index 0.86
SVM decision value 2.19
SVM RNA-class probability 0.989962
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5699352 97 + 22407834
GAUGAAUUGGCAGCAGUGUUGUUUGUUGACCGCAAAUAAACAACACCCACAACAAAACUAACAGCGAACAACGAGCAGCAAAC--ACCAGCGCUGUUUA
........((((((.((((((((((((.......)))))))))))).................((.........)).((....--....)))))))).. ( -23.00)
>DroSec_CAF1 144707 99 + 1
GAUCAAUUGGCAGCAGUGUUGUUUGUUGACCGCAAAUAAACAACACCCACAACAAAACUAACAGCGAACAACGGGCAGAAAACACACCAGCGCUGUUUA
......(((......((((((((((((.......))))))))))))......)))....(((((((.......(........).......))))))).. ( -23.34)
>DroSim_CAF1 144203 99 + 1
GAUGAAUUGGCAGCAGUGUUGUUUGUUGACCGCAAAUAAACAACACCCACAACAAAACUAACAGCGAACAACGGGCAGCAAACACACCAGCGCUGUUUA
......(((......((((((((((((.......))))))))))))......)))....(((((((.......(........).......))))))).. ( -23.34)
>DroEre_CAF1 147508 97 + 1
GACGUAUUGGCAGCAGUGCUGGUUGUUGACCGCAAAUAAACAACACCCACAACAAAACUAACAGCGAACAACGAGCAGCAAAC--ACCAGCGCUGUUUA
...........(((((((((((((((((..(((..............................)))..)))))..........--)))))))))))).. ( -23.31)
>DroYak_CAF1 146502 97 + 1
GAUGUAUUGGCAGCAGUGCUGGUUGUUGACCGCAAAUAAACAACACCCCCAACAAAACUAACAGCGAACAACGAGCAGCAAAC--ACCAGCGCUGUUUA
...........(((((((((((((((((..(((..............................)))..)))))..........--)))))))))))).. ( -23.31)
>consensus
GAUGAAUUGGCAGCAGUGUUGUUUGUUGACCGCAAAUAAACAACACCCACAACAAAACUAACAGCGAACAACGAGCAGCAAAC__ACCAGCGCUGUUUA
........((((((..((((((((((((..(((..............................)))..))))))))))))...........)))))).. (-20.05 = -20.17 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:56 2006