Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,692,939 – 5,693,029 |
Length | 90 |
Max. P | 0.704311 |
Location | 5,692,939 – 5,693,029 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -14.41 |
Energy contribution | -14.88 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.11 |
Mean z-score | -1.49 |
Structure conservation index | 0.65 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5692939 90 + 22407834 --------------AAGACGGCGUGAGAGU-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG------AUACUC-CUGAGCCCUU --------------.((((((((((((...-.))))))).((((((......))))))..............)))))...(((((....------......-)))))..... ( -20.40) >DroGri_CAF1 178770 93 + 1 ---------CAGUCGAGCGGGUGUGAGCGGUCCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAACAACGUCUGAUUUCUGUUAG------AUCUGGGGUG-GC---U ---------((.((.((.(((((((((.....))))))).((((((......)))))).))............(((((((....)))))------)))).)).))-..---. ( -19.50) >DroSim_CAF1 137652 90 + 1 --------------AAGACGGCGUGAGAGA-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG------AUACUC-CUGAGCCCUU --------------.((((((((((((...-.))))))).((((((......))))))..............)))))...(((((....------......-)))))..... ( -20.40) >DroEre_CAF1 140838 90 + 1 --------------AAGACGGCGUGAGAGA-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG------AUACUC-CUGAGCCCUU --------------.((((((((((((...-.))))))).((((((......))))))..............)))))...(((((....------......-)))))..... ( -20.40) >DroYak_CAF1 139762 96 + 1 --------------AAGACGGCGUGAGAGA-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAGGCCCAGUUACUC-CUGAGCCCUU --------------.((((((((((((...-.))))))).((((((......))))))..............)))))...........(((.(((......-))).)))... ( -25.70) >DroMoj_CAF1 277870 101 + 1 AAGGAGGCCCAGUUAGCUGGGUGUGAGCAGUGCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAACAACGUCUGAUUUCUGUAAG------AUCUCG-UUG-AC---U ..((..((((((....))))))((((((...))))))...((((((......)))))).))........(((((...(((((.....))------))).))-)))-..---. ( -27.30) >consensus ______________AAGACGGCGUGAGAGA_UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG______AUACUC_CUGAGCCCUU ...............((((((((((((.....))))))).((((((......))))))..............)))))................................... (-14.41 = -14.88 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:51 2006