Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 616,469 – 616,561 |
Length | 92 |
Max. P | 0.998895 |
Location | 616,469 – 616,561 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.17 |
Mean single sequence MFE | -19.42 |
Consensus MFE | -17.75 |
Energy contribution | -18.15 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.91 |
SVM decision value | 3.27 |
SVM RNA-class probability | 0.998895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 616469 92 + 22407834 ACUGUAAAAUGAACACUUGGUGACAAACGGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGAGAAAACGAU .((((...((((((((((..((((((...((....(((...)))..))......))))))..))))......)))))))))).......... ( -21.00) >DroSec_CAF1 5779 92 + 1 ACUGUAAAAUGAACACUUGGUGACAAACAGAAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGGGAAAAAGAU .((((...((((((((((..((((((.........(((...)))..........))))))..))))......)))))))))).......... ( -19.91) >DroSim_CAF1 4948 92 + 1 ACUGUAAAAUGAACACUUGGUGACAUACAGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGGGAAAACGAU .((((...((((((((((..((((...........(((...))).(((.....)))))))..))))......)))))))))).......... ( -18.70) >DroEre_CAF1 9134 92 + 1 ACUGUAAAAUGAACACUUGGUGACAAACAGCCAUAGCCAACGGCAACCAAAUUCUUGUCAAGGAGUUCCAAAGUUCGUACAGAGAAACAGAA .((((...((((((..(((....)))...(((.........))).....(((((((....))))))).....)))))))))).......... ( -19.60) >DroYak_CAF1 8125 92 + 1 ACUGUAAAAUGAACACUUGGUGACAAACAGCAAUAGCCAACGGCAACCAAAAUCUUGUCAAAGCGUUCCAAAGUUCGUACAGAGAAAAAGAU .((((...((((((..((((.(((.....((....))....(((((........))))).....))))))).)))))))))).......... ( -17.90) >consensus ACUGUAAAAUGAACACUUGGUGACAAACAGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGAGAAAAAGAU .((((...((((((((((..((((((.........(((...)))..........))))))..))))......)))))))))).......... (-17.75 = -18.15 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:45 2006