Locus 211

Sequence ID 2L_DroMel_CAF1
Location 616,469 – 616,561
Length 92
Max. P 0.998895
window326

overview

Window 6

Location 616,469 – 616,561
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.17
Mean single sequence MFE -19.42
Consensus MFE -17.75
Energy contribution -18.15
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.91
SVM decision value 3.27
SVM RNA-class probability 0.998895
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 616469 92 + 22407834
ACUGUAAAAUGAACACUUGGUGACAAACGGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGAGAAAACGAU
.((((...((((((((((..((((((...((....(((...)))..))......))))))..))))......)))))))))).......... ( -21.00)
>DroSec_CAF1 5779 92 + 1
ACUGUAAAAUGAACACUUGGUGACAAACAGAAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGGGAAAAAGAU
.((((...((((((((((..((((((.........(((...)))..........))))))..))))......)))))))))).......... ( -19.91)
>DroSim_CAF1 4948 92 + 1
ACUGUAAAAUGAACACUUGGUGACAUACAGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGGGAAAACGAU
.((((...((((((((((..((((...........(((...))).(((.....)))))))..))))......)))))))))).......... ( -18.70)
>DroEre_CAF1 9134 92 + 1
ACUGUAAAAUGAACACUUGGUGACAAACAGCCAUAGCCAACGGCAACCAAAUUCUUGUCAAGGAGUUCCAAAGUUCGUACAGAGAAACAGAA
.((((...((((((..(((....)))...(((.........))).....(((((((....))))))).....)))))))))).......... ( -19.60)
>DroYak_CAF1 8125 92 + 1
ACUGUAAAAUGAACACUUGGUGACAAACAGCAAUAGCCAACGGCAACCAAAAUCUUGUCAAAGCGUUCCAAAGUUCGUACAGAGAAAAAGAU
.((((...((((((..((((.(((.....((....))....(((((........))))).....))))))).)))))))))).......... ( -17.90)
>consensus
ACUGUAAAAUGAACACUUGGUGACAAACAGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGAGAAAAAGAU
.((((...((((((((((..((((((.........(((...)))..........))))))..))))......)))))))))).......... (-17.75 = -18.15 +   0.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:45 2006