Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,685,454 – 5,685,602 |
Length | 148 |
Max. P | 0.988394 |
Location | 5,685,454 – 5,685,563 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.03 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -22.09 |
Energy contribution | -22.03 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.31 |
Structure conservation index | 0.75 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5685454 109 - 22407834 GGAGCAAUUUAUGCUGCCUGCCCGACUCCUCGGGGGCAAUUGUCUGACUGCUCCUC---GCCUG--------GCUAGAACCUCCUCCUCCUCAAUUUCGCUCCUCCUCCUCUGGUCUUGU ((((((..(((.((((((..(((((....)))))))))...)).))).))))))..---((..(--------((((((...............................)))))))..)) ( -28.38) >DroSec_CAF1 130822 99 - 1 GGAGCAAUUUAUGCUGCCUGCCCGACUCCUCGGGGGCAAUUGUCUGACUGCUCCUC---GCCUG--------GCUAGAACCUCCUCCUCCU----------CCUACUCCUCUGGUCUACU ((((((..(((.((((((..(((((....)))))))))...)).))).))))))..---....(--------((((((.............----------........))))))).... ( -28.20) >DroEre_CAF1 133583 90 - 1 GGAGCAAUUUAUGCUGCUAGCCCGACUCCUCGGGGGCAAUUGUCUGACUGCUCCUC---GGAUG--------GCUGGAACCUC---------------GCUCCUC----UCCAGUCUUCC ((((((..(((.((((((..(((((....)))))))))...)).))).))))))..---(((.(--------((((((.....---------------.......----))))))).))) ( -33.10) >DroYak_CAF1 132269 102 - 1 GGAGCAAUUUAUGCUGCCUGCCCGACUCCUCGGGGGCAAUUGUCUGACUGCUCCUCCUCGCCUGGAACCUCGCCUGGAACCUC---------------GCUCCUCC---UGCCGUCCUCC ((((((..(((.((((((..(((((....)))))))))...)).))).))))))(((..((..(....)..))..))).....---------------((......---.))........ ( -28.40) >consensus GGAGCAAUUUAUGCUGCCUGCCCGACUCCUCGGGGGCAAUUGUCUGACUGCUCCUC___GCCUG________GCUAGAACCUC_______________GCUCCUCC___UCCGGUCUUCC ((((((..(((.((((((..(((((....)))))))))...)).))).))))))..................((((((...............................))))))..... (-22.09 = -22.03 + -0.06)
Location | 5,685,494 – 5,685,602 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -41.56 |
Consensus MFE | -33.86 |
Energy contribution | -34.02 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -2.42 |
Structure conservation index | 0.81 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5685494 108 + 22407834 GUUCUAGC--------CAGGC---GAGGAGCAGUCAGACAAUUGCCCCCGAGGAGUCGGGCAGGCAGCAUAAAUUGCUCCGACACGAAAGAAGUUGGAUUGCCGGGCAAGGAUAAGCAG (((((.((--------(.(((---((((((((((.......((((((((((....)))))..))))).....))))))))(((.(....)..)))...))))).))).)))))...... ( -43.10) >DroSec_CAF1 130852 108 + 1 GUUCUAGC--------CAGGC---GAGGAGCAGUCAGACAAUUGCCCCCGAGGAGUCGGGCAGGCAGCAUAAAUUGCUCCGACACGAAAGAAGUUGGAUUGCCGGGCAUGGAUAAGCAG ..((((((--------(.(((---((((((((((.......((((((((((....)))))..))))).....))))))))(((.(....)..)))...))))).))).))))....... ( -41.80) >DroSim_CAF1 130313 108 + 1 GUUCUAGC--------CAGGC---GAGGAGCAGUCAGACAAUUGCCCCCGAGGAGUCGGGCAGGCAGCAUAAAUUGCUCCGACACGAAAGAAGUUGGAUUGCCGGGCAAGGAUAAGCAG (((((.((--------(.(((---((((((((((.......((((((((((....)))))..))))).....))))))))(((.(....)..)))...))))).))).)))))...... ( -43.10) >DroEre_CAF1 133604 108 + 1 GUUCCAGC--------CAUCC---GAGGAGCAGUCAGACAAUUGCCCCCGAGGAGUCGGGCUAGCAGCAUAAAUUGCUCCGACACGAAAGAAGUUGGAUUGCCGGGCAAGGAUAAGCAG ...((.((--------.((((---((((((((((.......((((.(((((....)))))...)))).....))))))))....(....)...)))))).)).))((........)).. ( -35.70) >DroYak_CAF1 132291 119 + 1 GUUCCAGGCGAGGUUCCAGGCGAGGAGGAGCAGUCAGACAAUUGCCCCCGAGGAGUCGGGCAGGCAGCAUAAAUUGCUCCGACACGAAAGAAGUUGGAUUGCCGGGCAAGGAUAAGCAG ..(((.(((...(((((.........))))).)))......((((((((((....))))...(((((((.....)))((((((.(....)..)))))).)))))))))))))....... ( -44.10) >consensus GUUCUAGC________CAGGC___GAGGAGCAGUCAGACAAUUGCCCCCGAGGAGUCGGGCAGGCAGCAUAAAUUGCUCCGACACGAAAGAAGUUGGAUUGCCGGGCAAGGAUAAGCAG (((((.....................))))).(((......((((((((((....))))...(((((((.....)))((((((.(....)..)))))).)))))))))).)))...... (-33.86 = -34.02 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:45 2006