Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,685,313 – 5,685,418 |
Length | 105 |
Max. P | 0.710351 |
Location | 5,685,313 – 5,685,418 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 99.62 |
Mean single sequence MFE | -24.11 |
Consensus MFE | -23.48 |
Energy contribution | -23.68 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.97 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5685313 105 + 22407834 CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU .((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30) >DroSec_CAF1 130681 105 + 1 CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU .((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30) >DroSim_CAF1 130142 105 + 1 CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU .((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30) >DroEre_CAF1 133442 105 + 1 CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU .((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30) >DroYak_CAF1 132124 105 + 1 CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGCAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU .((((((......(((((((...((((((.......(((.........)))........))))))..)))))))..)))).......((((.......)))))). ( -23.36) >consensus CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU .((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). (-23.48 = -23.68 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:43 2006