Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,683,919 – 5,684,009 |
Length | 90 |
Max. P | 0.779944 |
Location | 5,683,919 – 5,684,009 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 86.77 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -22.62 |
Energy contribution | -23.65 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.03 |
Mean z-score | -3.06 |
Structure conservation index | 0.76 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5683919 90 - 22407834 -------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG-GGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC -------------.((((((((((...(-(((((((...(((......(((.(((((.(....).)-)))))))......))).))))))))))))))))))... ( -30.20) >DroGri_CAF1 157931 104 - 1 AAAAAAGAAAUGGCAACAAACAGUACCAAAAGCUGUUUAUGUGUUUGGAACGUGUUUGGCUGUCAU-GGCAUUUACCGUAACACGCAGCUUGUCCAUUUGUAACC .....(.(((((((((((((((((.(((((.((.......)).))))).)).))))))(((((.((-((......)))).))).))...))).)))))).).... ( -28.60) >DroSec_CAF1 129343 90 - 1 -------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG-GGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC -------------.((((((((((...(-(((((((...(((......(((.(((((.(....).)-)))))))......))).))))))))))))))))))... ( -30.20) >DroSim_CAF1 128773 90 - 1 -------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG-GGCAGUUACAUUUGCACGCAGGUUGUCCAUUUGUAAUC -------------.((((((((((((((-(((((((((.........))))).))))))..)))(.-(((((......)))).).).......)))))))))... ( -27.20) >DroEre_CAF1 132049 89 - 1 -------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUC--GAGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC -------------.((((((((((...(-(((((((.........((((.(((......)))))--))((((......))))..))))))))))))))))))... ( -30.70) >DroYak_CAF1 130679 91 - 1 -------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUUGGGAGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC -------------.((((((((((...(-(((((((........(((.(((((......))))).)))((((......))))..))))))))))))))))))... ( -32.00) >consensus _____________AUACAAAUGGGACCC_AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG_GGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC ..............((((((((((.....(((((((....((((...))))((((.((..(((.....)))....))...))))))))))).))))))))))... (-22.62 = -23.65 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:42 2006