Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,672,685 – 5,672,782 |
Length | 97 |
Max. P | 0.716559 |
Location | 5,672,685 – 5,672,782 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 84.92 |
Mean single sequence MFE | -34.82 |
Consensus MFE | -24.97 |
Energy contribution | -27.72 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.72 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5672685 97 + 22407834 GGGCGCGCUUCCUGCAAAUGUUUGCUUUUUUGCGAUGGCACUAAGCGAGGGAGCAGGCCCAACCACCACCCACU-----AGUUUUAUGGCACAGCUGGGUGG ((((..(((((((((...(((((((......))))..)))....)).)))))))..)))).....(((((((((-----.(((....)))..)).))))))) ( -38.30) >DroSec_CAF1 117789 102 + 1 GGGCGCGCUUCCUGCAAAUGUUUGCUUUUUUGCGAUGGCACUAAGCGAGGGAGCAGGCCCAACCACCACCCACUUUAUACGUUUUAUGGCACAGCUGGGUGG ((((..(((((((((...(((((((......))))..)))....)).)))))))..)))).....((((((((((((((.....)))))...)).))))))) ( -37.40) >DroSim_CAF1 117420 97 + 1 GGGCGCGCUUCCUGCAAAUGUUUGCUUUUUUGCGAUGGCACUAAGCGAGGGAGCAGGCCCAACCACCACCCACU-----AGUUUUAUGGCACAGCUGGGUGG ((((..(((((((((...(((((((......))))..)))....)).)))))))..)))).....(((((((((-----.(((....)))..)).))))))) ( -38.30) >DroYak_CAF1 119060 81 + 1 GGGCGCGCUUCCUGCAAAUGUUUGCUUUUUUGCGACAGCACUAAGCCA----------------CCCACCCACU-----AGUUUUAUGGCCCAAAUGGGCGG (((.(.((((..(((...((((.((......)))))))))..))))).----------------))).......-----.........((((....)))).. ( -25.30) >consensus GGGCGCGCUUCCUGCAAAUGUUUGCUUUUUUGCGAUGGCACUAAGCGAGGGAGCAGGCCCAACCACCACCCACU_____AGUUUUAUGGCACAGCUGGGUGG ((((..(((((((((...(((((((......))))..)))....)).)))))))..)))).....(((((((........(((....))).....))))))) (-24.97 = -27.72 + 2.75)
Location | 5,672,685 – 5,672,782 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.92 |
Mean single sequence MFE | -32.48 |
Consensus MFE | -22.09 |
Energy contribution | -24.22 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.07 |
Mean z-score | -1.56 |
Structure conservation index | 0.68 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5672685 97 - 22407834 CCACCCAGCUGUGCCAUAAAACU-----AGUGGGUGGUGGUUGGGCCUGCUCCCUCGCUUAGUGCCAUCGCAAAAAAGCAAACAUUUGCAGGAAGCGCGCCC (((((((.((((........)).-----))))))))).....((((.((((.(((.((..((((.....((......))...)))).))))).)))).)))) ( -33.80) >DroSec_CAF1 117789 102 - 1 CCACCCAGCUGUGCCAUAAAACGUAUAAAGUGGGUGGUGGUUGGGCCUGCUCCCUCGCUUAGUGCCAUCGCAAAAAAGCAAACAUUUGCAGGAAGCGCGCCC (((((((..(((((........)))))...))))))).....((((.((((.(((.((..((((.....((......))...)))).))))).)))).)))) ( -34.50) >DroSim_CAF1 117420 97 - 1 CCACCCAGCUGUGCCAUAAAACU-----AGUGGGUGGUGGUUGGGCCUGCUCCCUCGCUUAGUGCCAUCGCAAAAAAGCAAACAUUUGCAGGAAGCGCGCCC (((((((.((((........)).-----))))))))).....((((.((((.(((.((..((((.....((......))...)))).))))).)))).)))) ( -33.80) >DroYak_CAF1 119060 81 - 1 CCGCCCAUUUGGGCCAUAAAACU-----AGUGGGUGGG----------------UGGCUUAGUGCUGUCGCAAAAAAGCAAACAUUUGCAGGAAGCGCGCCC (((((((((.((.........))-----))))))))).----------------.(((...(((((..((((((..........))))).)..)))))))). ( -27.80) >consensus CCACCCAGCUGUGCCAUAAAACU_____AGUGGGUGGUGGUUGGGCCUGCUCCCUCGCUUAGUGCCAUCGCAAAAAAGCAAACAUUUGCAGGAAGCGCGCCC (((((((.((..................))))))))).....((((.((((.(((.((..((((.....((......))...)))).))))).)))).)))) (-22.09 = -24.22 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:39 2006