Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,668,257 – 5,668,375 |
Length | 118 |
Max. P | 0.997651 |
Location | 5,668,257 – 5,668,375 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.24 |
Mean single sequence MFE | -32.74 |
Consensus MFE | -30.84 |
Energy contribution | -30.44 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.89 |
Structure conservation index | 0.94 |
SVM decision value | 2.90 |
SVM RNA-class probability | 0.997651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5668257 118 + 22407834 --CCCCCCCCCCUCACGAUCCUGUUCGUCCUUAGCUGCAAGGCUCGCCUUACGUUGCCUUAACAGUUUUCAAUUUUCCGACGCUUGUAAGCGCAGCUGACAGCGACUAGCGAACGAUACU --.............((.(((((.((((..(((((((((((((.((.....))..))))).....................(((....)))))))))))..)))).))).)).))..... ( -33.40) >DroSec_CAF1 113328 116 + 1 --CCGCCCCCACU--CGAUCCUGUUCGUCCUUAGCUGCAAGGCUCGCCUUACAUUGCCUUAACAGUUUUCAAUUUUCCGACGCUUGUAAGCGCAGCUGACAGCGACUAGCGAACGAUACU --..........(--((.(((((.((((..(((((((((((((............))))).....................(((....)))))))))))..)))).))).)).))).... ( -33.00) >DroSim_CAF1 112982 116 + 1 --CCGCCCCCACU--CGAUCCUGUUCGUCCUUAGCUGCAAGGCUCGCCUUACGUUGCCUUAACAGUUUUCAAUUUUCCGACGCUUGUAAGCGCAGCUGACAGCGACUAGCGAACGAUACU --..........(--((.(((((.((((..(((((((((((((.((.....))..))))).....................(((....)))))))))))..)))).))).)).))).... ( -34.40) >DroEre_CAF1 114834 109 + 1 -----------CCGCUGAUCCUGUUCGUCCUUAGCUGCAAGGCUCGCCUUUCGUUGCCUUAACAGUUUUCAAUUUUCCGACGUUUGUAAGCGCAGCUGACAGCGACUAGCGAACGAUACU -----------.(((((.(((((((.......(((((((((((.((.....))..)))))....((((.(((...........))).))))))))))))))).)).)))))......... ( -31.71) >DroYak_CAF1 114570 120 + 1 CACCGCCCCCUCCCCUGAUCCUGUUCGUCCUUAGCUGCAAGGCUCGCCUUACGUUGCCUUAACAGUUUUCAAUUUUCCGACGCUUGUAAGCGCAGCUGACAGCGACUAGCGAACGAUACU ...............((.(((((.((((..(((((((((((((.((.....))..))))).....................(((....)))))))))))..)))).))).)).))..... ( -31.20) >consensus __CCGCCCCCACU__CGAUCCUGUUCGUCCUUAGCUGCAAGGCUCGCCUUACGUUGCCUUAACAGUUUUCAAUUUUCCGACGCUUGUAAGCGCAGCUGACAGCGACUAGCGAACGAUACU ...............((.(((((.((((..(((((((((((((............))))).....................(((....)))))))))))..)))).))).)).))..... (-30.84 = -30.44 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:37 2006