| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,665,617 – 5,665,707 |
| Length | 90 |
| Max. P | 0.786233 |
| Location | 5,665,617 – 5,665,707 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -11.18 |
| Energy contribution | -11.23 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5665617 90 + 22407834 CUUAUCCCGAAACACUUUUUGGACAGUUCAAACUUCGCU---UUCCCCAAUUCAU-------UUUUUUUUUUUUCAAAUUUGGCGGCAAGCGAUGACUGC ......((((((....)))))).((((.((....(((((---(.((((((.....-------.................)))).)).)))))))))))). ( -20.15) >DroSec_CAF1 110660 83 + 1 CUUAUCCCGAAACACUUUUUGGACAGUUCAAACUUCGCU---UUCCCCAAUUCUU-------U-----U--UUUCAAAUUUGGCGGCAAGCGAUGACUGC ......((((((....)))))).((((.((....(((((---(.((((((.....-------.-----.--........)))).)).)))))))))))). ( -20.56) >DroSim_CAF1 110300 85 + 1 CUUAUCCCGAAACACUUUUUGGACAGUUCAAACUUCGCU---UUCCCCAAUUCUU-------U-----UUUUUUUAAAUUUGGCGGCAAGCGAUGACUGC ......((((((....)))))).((((.((....(((((---(.((((((.....-------.-----...........)))).)).)))))))))))). ( -20.43) >DroEre_CAF1 111900 91 + 1 CUUAUCCCGAAACACUUUUUGGACAGUUCAAACUUCGCU---UUGCCCAAUUUU------UAUUUUUUUUUUUUCAAAAUUGGCGGCAAGCGAUGACUGC ......((((((....)))))).((((.((....(((((---(.((((((((((------...............)))))))..))))))))))))))). ( -20.56) >DroYak_CAF1 111771 97 + 1 CUUAUCCCGAAACACUUUUUGGACAGUUCAAACUUCGUU---UUACCCAAUUUUUUAUUUUGUUUUUUUUUUUCCAAAAUUGGCGGCAAGCGAUGACUGC ......((((((....)))))).((((.((....(((((---(..(((((((((.....................)))))))).)..)))))))))))). ( -17.30) >DroAna_CAF1 106224 86 + 1 CUUAACCUAAAACACUUUUUGGACAGUUCUCACUUCGUUGUUCUCCCCCAUUUU--------------UUUGCCCCGAUUCGACGGCAGACAAUGACUGG ......((((((....)))))).(((((....((((((((........((....--------------..))........)))))).)).....))))). ( -11.59) >consensus CUUAUCCCGAAACACUUUUUGGACAGUUCAAACUUCGCU___UUCCCCAAUUCUU_______U_____UUUUUUCAAAUUUGGCGGCAAGCGAUGACUGC ......((((((....)))))).(((((......(((((.....((((((.............................)))).))..))))).))))). (-11.18 = -11.23 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:36 2006