Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,662,106 – 5,662,223 |
Length | 117 |
Max. P | 0.711041 |
Location | 5,662,106 – 5,662,223 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -33.16 |
Consensus MFE | -26.60 |
Energy contribution | -27.32 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.10 |
Mean z-score | -1.57 |
Structure conservation index | 0.80 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5662106 117 - 22407834 CGAAAUGUCAUCGAAAAGAAGCCAGCUUACUUUGCUUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUAGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG (((.......)))(((((..(((((((.((.((((((.((((.......)))).))))))....)).)))))))..))))).(((((.((((((((....))))))))))))).... ( -36.00) >DroSec_CAF1 107096 117 - 1 CGAAAUGCCAUCGAAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUAGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG .......((.((.(((((..(((((((.((.((((...((((.......))))...))))....)).)))))))..)))))..((((.((((((((....)))))))))))))).)) ( -33.60) >DroSim_CAF1 106755 117 - 1 CGAAAUGCCAUCGAAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUCGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG .......((.((((.((((((((((((.((.((((...((((.......))))...))))....)).)))))))..))))).))))((((((((((....)))))))))).....)) ( -34.90) >DroEre_CAF1 108401 105 - 1 CGAAAU------------UAGCCAGCUUACUUUGCCUAAUAGCAUUUAUUUGUGAAGCAAUUUCGUCAGCUGGUAAUUUGUGUAGAGGCCGUUUGGAAUGCCAGAUGGCGCUGGAGG ..((((------------((.((((((.((.((((......(((......)))...))))....)).)))))))))))).(.(((..(((((((((....))))))))).))).).. ( -33.20) >DroYak_CAF1 108139 117 - 1 GGAAAUGCCAUCGGAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGCGAAGCACUUUUGUCGGCCGGUAAUUUGUGCAGAGGACGUUUGGAAUGUCAGAUGGCUCUGGAGG ......(((((((((((((((....))).)))).)).....(((......)))...((((..((..(....)..))...))))....(((((.....))))).))))))........ ( -28.10) >consensus CGAAAUGCCAUCGAAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUAGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG ....................(((((((.((.((((...((((.......))))...))))....)).)))))))........(((((.((((((((....))))))))))))).... (-26.60 = -27.32 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:34 2006