Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,659,226 – 5,659,322 |
Length | 96 |
Max. P | 0.552320 |
Location | 5,659,226 – 5,659,322 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 82.03 |
Mean single sequence MFE | -24.56 |
Consensus MFE | -18.65 |
Energy contribution | -19.93 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.31 |
Structure conservation index | 0.76 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5659226 96 + 22407834 GGCCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUUCGGUCUCUCU--UACCC (((.((((((....((((....)))).))))))))).(((((........(((((.....))))).......)))))((....))......--..... ( -27.86) >DroPse_CAF1 128741 98 + 1 GGACUGCCAAUACUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUUACACACACUCUCUCGCUCGCUC ((.(((((((....((((....)))).)))))))))(((.((((......))))......(..((..(((..((.....)).)))..))..)..))). ( -24.30) >DroEre_CAF1 105576 96 + 1 GGCCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUGUGGUCUCUCU--UACGC (((.((((((....((((....)))).))))))))).(((((........(((((.....))))).......)))))((.((((......)--))))) ( -27.16) >DroYak_CAF1 105336 96 + 1 GACCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUGUGGUCUCUCU--UACAA ((((((((((....((((....)))).))))))..((((............((((.....))))((((....)).)))))).)))).....--..... ( -26.40) >DroMoj_CAF1 200020 76 + 1 ----UGCCAACGCAUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUCCACUUAAUGUAGGUCAGUGAUGUGUU-----------------CG- ----((((((...(((((....)))))))))))(((.((((.................)))).)))............-----------------..- ( -17.33) >DroPer_CAF1 132284 98 + 1 GGACUGCCAAUACUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUUACACACACUCUCUCGCUCGCUC ((.(((((((....((((....)))).)))))))))(((.((((......))))......(..((..(((..((.....)).)))..))..)..))). ( -24.30) >consensus GGCCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUACGGUCUCUCU__UACGC ((.(((((((....((((....)))).))))))))).(((((........(((((.....))))).......)))))..................... (-18.65 = -19.93 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:33 2006