Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 614,845 – 614,972 |
Length | 127 |
Max. P | 0.897115 |
Location | 614,845 – 614,941 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -13.94 |
Energy contribution | -14.49 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.55 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 614845 96 - 22407834 UUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUACACUUGGCUGAUGUUUAAUGCUUAAUGGCAUUAA ((((((((.((....))))))))))......((..((((...((((((....))))))......))))..))....((((((((....)))))))) ( -27.60) >DroVir_CAF1 2600 78 - 1 UUUCGGUGUGGUCCCCCCCCCUACCC------------------CAGCGCCAGAGGUUAAUACACUUGCCUCAUGUUUAAUCCUAAAUGGCAUUAA ....((((.((.......)).)))).------------------....(((.(((((..........)))))..(((((....))))))))..... ( -17.00) >DroSim_CAF1 3351 96 - 1 UUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUACACUUAGCUGAUGUUUAAUGCUUAAUGGCAUUAA ((((((((.((....)))))))))).......((((......)))).((((((((((......))))..)))))).((((((((....)))))))) ( -26.90) >DroEre_CAF1 6044 96 - 1 UUUCGGUGUGGUCCCCCCACUGAAACACUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUACACUUGGCUGAUGUUUAAUGCUUAAUGGCAUUAA ((((((((.((....)))))))))).((...((..((((...((((((....))))))......))))..))..))((((((((....)))))))) ( -27.90) >DroYak_CAF1 6579 96 - 1 UUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUACACUUGGCUGAUGUUUAAUGCUUAAUGGCAUUAA ((((((((.((....))))))))))......((..((((...((((((....))))))......))))..))....((((((((....)))))))) ( -27.60) >DroMoj_CAF1 2349 78 - 1 UUUCGGUGUGGUCCCUCGCCUCACCG------------------CCCCGCCAGGGGUUAAUACACUUGCCUCAUGUUUAAUCCUAAAUGGCAUUAA ...(((((.(((.....))).)))))------------------....((((((((((((.(((.........)))))))))))...))))..... ( -24.20) >consensus UUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUACACUUGGCUGAUGUUUAAUGCUUAAUGGCAUUAA ....((((((...((((.............((......))............))))....))))))..........((((((((....)))))))) (-13.94 = -14.49 + 0.56)
Location | 614,879 – 614,972 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 99.57 |
Mean single sequence MFE | -34.02 |
Consensus MFE | -33.52 |
Energy contribution | -33.72 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.34 |
Structure conservation index | 0.99 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 614879 93 + 22407834 UAUUAACCCCUGAUGGGAUCGAGCUUGAUCGCGAGGGUUUCAGUGGGGGGACCACACCGAAAUGGCUUGCUCAUGACCAGCGGCGAGGUCAGA ......(((((..((..(((..((......))...)))..))..)))))((((.(.(((...((((........).))).))).).))))... ( -34.20) >DroSec_CAF1 4247 93 + 1 UAUUAACCCCUGAUGGGAUCGAGCUUGAUCGCGAGGGUUUCAGUGGGGGGACCACACCGAAAUGGCUUGCUCAUGACCAGCGGCGAGGUCAGA ......(((((..((..(((..((......))...)))..))..)))))((((.(.(((...((((........).))).))).).))))... ( -34.20) >DroSim_CAF1 3385 93 + 1 UAUUAACCCCUGAUGGGAUCGAGCUUGAUCGCGAGGGUUUCAGUGGGGGGACCACACCGAAAUGGCUUGCUCAUGACCAGCGGCGAGGUCAGA ......(((((..((..(((..((......))...)))..))..)))))((((.(.(((...((((........).))).))).).))))... ( -34.20) >DroEre_CAF1 6078 93 + 1 UAUUAACCCCUGAUGGGAUCGAGCUUGAUCGCGAGUGUUUCAGUGGGGGGACCACACCGAAAUGGCUUGCUCAUGACCAGCGGCGAGGUCAGA .....(((((((.((((((((....)))))(((((((((((.(((((....)).))).))))).))))))......))).))).).))).... ( -33.30) >DroYak_CAF1 6613 93 + 1 UAUUAACCCCUGAUGGGAUCGAGCUUGAUCGCGAGGGUUUCAGUGGGGGGACCACACCGAAAUGGCUUGCUCAUGACCAGCGGCGAGGUCAGA ......(((((..((..(((..((......))...)))..))..)))))((((.(.(((...((((........).))).))).).))))... ( -34.20) >consensus UAUUAACCCCUGAUGGGAUCGAGCUUGAUCGCGAGGGUUUCAGUGGGGGGACCACACCGAAAUGGCUUGCUCAUGACCAGCGGCGAGGUCAGA ......(((((..((..(((..((......))...)))..))..)))))((((.(.(((...((((........).))).))).).))))... (-33.52 = -33.72 + 0.20)
Location | 614,879 – 614,972 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 99.57 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -29.40 |
Energy contribution | -29.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 1.00 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 614879 93 - 22407834 UCUGACCUCGCCGCUGGUCAUGAGCAAGCCAUUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUA ..(((((........))))).((((..((..((((((((.((....)))))))))).....))......))))((((((....)))))).... ( -29.40) >DroSec_CAF1 4247 93 - 1 UCUGACCUCGCCGCUGGUCAUGAGCAAGCCAUUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUA ..(((((........))))).((((..((..((((((((.((....)))))))))).....))......))))((((((....)))))).... ( -29.40) >DroSim_CAF1 3385 93 - 1 UCUGACCUCGCCGCUGGUCAUGAGCAAGCCAUUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUA ..(((((........))))).((((..((..((((((((.((....)))))))))).....))......))))((((((....)))))).... ( -29.40) >DroEre_CAF1 6078 93 - 1 UCUGACCUCGCCGCUGGUCAUGAGCAAGCCAUUUCGGUGUGGUCCCCCCACUGAAACACUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUA ..(((((........))))).((((..((..((((((((.((....)))))))))).....))......))))((((((....)))))).... ( -29.40) >DroYak_CAF1 6613 93 - 1 UCUGACCUCGCCGCUGGUCAUGAGCAAGCCAUUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUA ..(((((........))))).((((..((..((((((((.((....)))))))))).....))......))))((((((....)))))).... ( -29.40) >consensus UCUGACCUCGCCGCUGGUCAUGAGCAAGCCAUUUCGGUGUGGUCCCCCCACUGAAACCCUCGCGAUCAAGCUCGAUCCCAUCAGGGGUUAAUA ..(((((........))))).((((..((..((((((((.((....)))))))))).....))......))))((((((....)))))).... (-29.40 = -29.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:42 2006