Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 83,600 – 83,714 |
Length | 114 |
Max. P | 0.525283 |
Location | 83,600 – 83,714 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -17.59 |
Energy contribution | -17.93 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.30 |
Mean z-score | -1.99 |
Structure conservation index | 0.59 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 83600 114 - 22407834 AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAAAAAGAAUCAACGUCAUCUUCCUUUUUAGAAGCUAGUCUUAGCGAUGAGGAUCUGAACAAGACGGGAUUGGCA .....(((((((.((.......(...(((((((..((((.............))))...)))))))...)..((((....)))).....)).(((.....)))..))).)))). ( -27.22) >DroSec_CAF1 56045 114 - 1 AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAGAAAGAAUCAACAUCAUCUUCAUUUUUAGACGCUAGUCUUAGCGAUGAGGAUCUGAGCAAGACGGGAUUGGCA .....((((((((.(........(((((....................))))).(((((((((((...((((....))))....))))))))..)))....).))))..)))). ( -26.85) >DroSim_CAF1 58537 114 - 1 AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAAAAAGAAUCAACAUCAUCUUCAUUUUUAGACGCUAGUCUUAGCGAUGAGGAUCUGAGCAAGACGGGAUUGGCA .....((((((((.(........(((((....................))))).(((((((((((...((((....))))....))))))))..)))....).))))..)))). ( -26.85) >DroEre_CAF1 63014 114 - 1 AAACAGCCAGCCGCCAAAAAAGCAUUGAAGGAAAGAACGCAAAAAGAAUCAACGCCAUCUUCAUUUCUAGACGCCAGUCUUAGCGAUGAGGAUCUGUGCAAGGCGGGAUUGGCA .....((((((((((......((((.((.((........(.....)........)).((((((((.((((((....))).))).)))))))))).))))..)))))..))))). ( -34.79) >DroYak_CAF1 56114 114 - 1 AAGCAGCCAUCCGCCAAAAAAACUUUGAAGGAAAGGACGCAAAAAGAAUCAGCGGCAUCUUCAUUCCUAGACGCCAGUCUUAGCGAUGACGAUCUAUGCAAGGCGGGACUGGCA .....((((((((((.......((((......))))...............(((..(((.(((((.((((((....))).))).))))).)))...)))..))))))..)))). ( -34.50) >DroPer_CAF1 76409 114 - 1 AAACCACAAAAUCCAAAAAAGACAUUGCACAAAAAAAUGGCGAAAGAAGCAAUCGCGGCAUCAUUGAUUGAUGCAAAUCUUAGCGAUGAGGACAUGUGCAAGGUUGGGUCGGGG ...((.....((((((........(((((((.....((.((..((((.((....)).((((((.....))))))...)))).)).)).......)))))))..))))))..)). ( -29.70) >consensus AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAAAAAGAAUCAACGUCAUCUUCAUUUUUAGACGCUAGUCUUAGCGAUGAGGAUCUGAGCAAGACGGGAUUGGCA .....((((..(.((........(((((....................)))))...(((((((((.((((((....))).))).)))))))))...........)))..)))). (-17.59 = -17.93 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:27 2006