Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,658,733 – 5,658,824 |
Length | 91 |
Max. P | 0.837706 |
Location | 5,658,733 – 5,658,824 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -20.28 |
Energy contribution | -20.16 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -2.57 |
Structure conservation index | 0.72 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5658733 91 - 22407834 GGGUCGACUUCGAUGCCCCAACAAUGGUUUCUUAUCCUGCCACA--GCACUGUUAACCAGCUAACAGAGCUCUGGCUCUGUUGCUCUCUAACG ((((((....))..))))(((((..((........)).((((.(--((.((((((......)))))).))).))))..))))).......... ( -26.80) >DroSec_CAF1 103802 91 - 1 GGGCCGACGUUGUUGCCCCAACAAUGGUUUCUUGUCCUGCCACA--GCACUGUUAACGGGCUAACAGAGCUCUGCCUCUGUUGCUCUCUAACA ((((...((((((((...)))))))).......))))(((....--)))..((((..((((.(((((((......)))))))))))..)))). ( -28.00) >DroSim_CAF1 103428 91 - 1 GGGCCGACUUUGUUGGCCCAACAAUGGUUUCUUAUCCUGCCACA--GCACUGUUAACGGGCUAACAGAGCUCUGCCUCUGUUGCUCUCUAACA ((((((((...)))))))).....((((..........))))..--.....((((..((((.(((((((......)))))))))))..)))). ( -33.30) >DroEre_CAF1 105089 91 - 1 GCGCCGACUUUGUUGCCCUAACAAUGGUUUCUUAUCCUGCCACA--GCACUGUUAACCGGCUAACAGAGCUCGGGCUCUGUUGCUCUCUAACA ((((((((..(((((.........((((..........))))))--)))..))....)))).((((((((....))))))))))......... ( -25.50) >DroYak_CAF1 104827 93 - 1 GGCCUGACUUUGUUGCCCCAACAAUGGUUUCUUAUCCUGCCACAGAGCACUGUUAACCAGCUAACAGAGCUCUGCCUCUGUUGCUCUUUAACA .(((((...((((((...))))))((((..........))))))).))...(((((..(((.(((((((......))))))))))..))))). ( -26.50) >consensus GGGCCGACUUUGUUGCCCCAACAAUGGUUUCUUAUCCUGCCACA__GCACUGUUAACCGGCUAACAGAGCUCUGCCUCUGUUGCUCUCUAACA (((.((((...)))).))).....((((..........))))........(((((...(((.(((((((......))))))))))...))))) (-20.28 = -20.16 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:32 2006