Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,657,787 – 5,657,879 |
Length | 92 |
Max. P | 0.569079 |
Location | 5,657,787 – 5,657,879 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -16.67 |
Consensus MFE | -12.53 |
Energy contribution | -12.53 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -1.65 |
Structure conservation index | 0.75 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5657787 92 - 22407834 UCAAACAGAACGCAACGAAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUCGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA ((((((((((..((.........))...)))))))))).....((((((((((((....))))))))((((.(........))))).)))). ( -16.40) >DroSec_CAF1 102847 92 - 1 UCAAACAGAACGGAACGGAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUUGAAAGUGGUUGACAACAUAAAGCUGUGUCACAUUA ((((((((((..................)))))))))).....((((((((((((....))))))))((((.((......)))))).)))). ( -16.37) >DroSim_CAF1 102473 92 - 1 UCAAACAGAACGGAACGGAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUUGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA ...........(..((((..(((((........(((....)))..(.((((((((....)))))))).)...)))))..))))..)...... ( -15.50) >DroEre_CAF1 104129 92 - 1 UCAAAGGGAAUGAAACAAUAUUAUGAAAUUUUGUGUGAAAAAAUAUGAAGUACUUUUGAAAGUGGUUGACGACAUAAAGCCGUGUCACAUUA (((((((........((......))..((((..(((......)))..)))).)))))))...........(((((......)))))...... ( -14.40) >DroYak_CAF1 103857 91 - 1 UCAAACAAAAUGAAAUGGUAUUAUGAAAUUUUGUUUGAAAAAA-AUUAACUACUUUUGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA ..........(((.(((((.(((((........(((....)))-.((((((((((....))))))))))...))))).))))).)))..... ( -20.70) >consensus UCAAACAGAACGAAACGGAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUUGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA ((((((((((..................)))))))))).........((((((((....))))))))((((.(........)))))...... (-12.53 = -12.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:31 2006