Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,651,768 – 5,651,866 |
Length | 98 |
Max. P | 0.834930 |
Location | 5,651,768 – 5,651,866 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 71.21 |
Mean single sequence MFE | -36.65 |
Consensus MFE | -15.59 |
Energy contribution | -13.32 |
Covariance contribution | -2.27 |
Combinations/Pair | 1.59 |
Mean z-score | -1.94 |
Structure conservation index | 0.43 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5651768 98 + 22407834 CGGCGGCGGUGGCAGUGGCAACAAUUAGCCGGGAGGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUCUGCGCUGGCGACGC .((((((((.((.(((.(((.......((((((((....)))))))).......((....))))).))).))))))))))((((.((....)))))). ( -48.50) >DroVir_CAF1 149739 83 + 1 -------GGCGGCAGCGGCAACAAUUAGCCAUGAGCAUAUUUCCGGCAUUUUAUGUUUCCGCUGCAGUUUCAUUACG------CGGCGCCGGCGC--U -------(((((((((((.((((....(((..(((.....))).)))......)))).))))))).((......)).------...)))).....--. ( -27.60) >DroGri_CAF1 116694 83 + 1 -------GGCGGCAGCGGCAACAAUUAGCCAUGAGCAUAUUUCCGGCAUUUUAUGUUUCCGUUGCAGUUUCAUUACG------CGACGUCGUGGC--U -------(((.(((((((.((((....(((..(((.....))).)))......)))).)))))))..........((------((....))))))--) ( -24.70) >DroSec_CAF1 96794 98 + 1 CGGCAGCGGUGGCAGUGGCAACAAUUAGCCGGGAGGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUUUGCGCUGGCGACGC ..(((((((.(((..((....))....((((((((....)))))))).......))).))))))).((.((.(((.(((......))).))).)).)) ( -44.30) >DroSim_CAF1 96196 98 + 1 CGGCGGCGGUGGCAGUGGCAACAAUUAGCCGGGAAGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUCUGCGCUUUCGACGC .((((((((.((.(((.(((.......((((((((....)))))))).......((....))))).))).))))))))))((((.........)))). ( -46.00) >DroWil_CAF1 137666 84 + 1 --G----GGUAAAAGUGGCAACAAUUAGCCAUGAGGAUAUUUCCGGCAUUUUAUGCUUCCGUUGUUGCUGCUGCU--------GUGUCAUUACGCGGC --.----......((..((((((((.(((.(((.(((....)))..))).....)))...))))))))..))(((--------((((....))))))) ( -28.80) >consensus __G____GGUGGCAGUGGCAACAAUUAGCCAGGAGGAUAUUUCCGGCAUUUCACGCUUCCGCUGCAGCUUCCCCGCC______CUGCGCUGGCGACGC .......(((((((((((........(((.((((((............))))))))).))))))).((......))..........))))........ (-15.59 = -13.32 + -2.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:30 2006